PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g051600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 390aa    MW: 43201.2 Da    PI: 6.4421
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g051600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.28e-115273832373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +lLl+cAe+v++++l++a++lL+++se++sp g++ +R++ayf++AL++r+ +   s+ +++l+ ++ s  +s++ ++al++f+ vsP++kfsh
  Csa10g051600.1  27 LSLLLQCAEHVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISsYLSSACSTLSEKPLSVAQSQKIFSALQTFNAVSPLIKFSH 121
                     689************************************************9997889999*********999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI +a++ge+ vHiiD+d++qGlQWpaL+  LasRp++  s+RiTg+gs    s+e l +tg+rLa+fA++l++pfef+++  k  + +e
  Csa10g051600.1 122 FTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFYILASRPRKLRSIRITGFGS----SSELLASTGRRLADFASSLNLPFEFHPIEGKIGNLIE 212
                     ******************************************************....99*************************988888899* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerik 284
                     +++L +++gEa++V+++   hrl+d +++  +    +L+++++l+P++v+vveqe+++ +++sFl rf+eal+yysalfd+l  +l++es er  
  Csa10g051600.1 213 PSQLGTRQGEAVVVHWMQ--HRLYDVTGNDLE----TLEILRRLKPNLVTVVEQELSYdDGGSFLGRFVEALHYYSALFDALGDGLSEESGERFA 301
                     *****************9..****88888777....**********************8999********************************* PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+ +l+ ei+ +va+ g++   r     kWre ++++ F+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW
  Csa10g051600.1 302 VEQIVLATEIRHIVAHGGRK---R----VKWREEFNRVRFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAW 383
                     *******************9...3....46*********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.6781364IPR005202Transcription factor GRAS
PfamPF035142.8E-11227383IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTTKPIDRDF PSSKTLENDG AAAIKLLSLL LQCAEHVATD HLREASTLLS EISEICSPFG  60
SSPERVVAYF AQALQTRVIS SYLSSACSTL SEKPLSVAQS QKIFSALQTF NAVSPLIKFS  120
HFTANQAIFQ ALDGEDSVHI IDLDVMQGLQ WPALFYILAS RPRKLRSIRI TGFGSSSELL  180
ASTGRRLADF ASSLNLPFEF HPIEGKIGNL IEPSQLGTRQ GEAVVVHWMQ HRLYDVTGND  240
LETLEILRRL KPNLVTVVEQ ELSYDDGGSF LGRFVEALHY YSALFDALGD GLSEESGERF  300
AVEQIVLATE IRHIVAHGGR KRVKWREEFN RVRFRPVSLR GNPATQAGLL LGMLPWNGYT  360
LVEENGTLRL GWKDLSLLTA SAWISQPFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1413238324377Protein SCARECROW
5b3h_D1e-1413238324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g051600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170670.0AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297600.0BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436142.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A178UEI10.0A0A178UEI1_ARATH; Uncharacterized protein
STRINGXP_010436142.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]