PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049960.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 621aa    MW: 70273 Da    PI: 7.0899
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049960.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.16.9e-094124491954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Csa10g049960.2 412 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 449
                     554459******************************88 PP
2BELL97.61e-31267341172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++elqk+kakLlsllee+++rY +y+eq+++ ++sFea+   +g+g+a++Yt+lA++a+SrhFrcLkd +++q+
  Csa10g049960.2 267 EFMELQKRKAKLLSLLEELKRRYGHYREQMRIAAASFEAAvaaVGVGAAEVYTALASRAMSRHFRCLKDGLVGQV 341
                     679***********************************752227***************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.4E-41193337IPR006563POX domain
SMARTSM005749.6E-65199339IPR006563POX domain
PROSITE profilePS5007112.017390453IPR001356Homeobox domain
SMARTSM003895.6E-9393457IPR001356Homeobox domain
CDDcd000861.90E-10393454No hitNo description
SuperFamilySSF466893.04E-17394461IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-28396460IPR009057Homeodomain-like
PfamPF059208.2E-18410449IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MARDQFYGHN HHHHQEQQHQ MINQIQGFDE TNQNPTDHHH HYSHQIFGSN SNMGMMIDFS  60
KQQQIRMTSG PDHHHHHDQT SGGTDQNQLL EDSSSTMRLC NGNNDFPSEV NDERPPRRPS  120
QGLSLSLSSS NPTSISLQPF ELRTQQQQQG YSGKSAHHQN LQHSQMMMMM MNSHHQNNNN  180
NHQHHNHHHQ FQIGSSKYLS PAQELLSEFC SLGVKESDEE VMMMKHKKKQ KGKQQEEWDT  240
SHNNNDQHEQ SATTSSKKHV PPLHSLEFME LQKRKAKLLS LLEELKRRYG HYREQMRIAA  300
ASFEAAVAAV GVGAAEVYTA LASRAMSRHF RCLKDGLVGQ VQATSQALGE REEDNRAVSI  360
AARGETPRLR LLDQALRQQK SYRQMTLVDA HPWRPQRGLP ERAVTTLRAW LFEHFLHPYP  420
SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEEMYC EETRGEQMES TTNPMMVDTK  480
PDPNQIIRVE PESLSSIVTN PTSKTGLKAL NSNQPATTSY GSNFDFSLYG NQAVTCAGEG  540
GPRGDVSLTL GLQQRNDGNG GVSLALSPVT AQGGQLYYGS RDHTDQEGPV QYSASMLDDD  600
QVQNLPYRNL MGAQLLHDIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15399457563Homeobox protein Meis2
3k2a_B3e-15399457563Homeobox protein Meis2
4xrm_A4e-15399457563Homeobox protein Meis2
4xrm_B4e-15399457563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049960.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU399440.0U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds.
GenBankAY0492370.0AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds.
GenBankAY0545130.0AY054513.1 Arabidopsis thaliana homeotic protein BEL1 homolog (At5g41410; MYC6.12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436095.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLD7MIV50.0D7MIV5_ARALL; Uncharacterized protein
STRINGXP_010436095.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]