PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g049960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 637aa MW: 72246.4 Da PI: 7.1689 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.1e-09 | 428 | 465 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Csa10g049960.1 428 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 465 554459******************************88 PP | |||||||
2 | BELL | 70.8 | 2.4e-23 | 294 | 357 | 12 | 72 |
BELL 12 LlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Lls ++++rY +y+eq+++ ++sFea+ +g+g+a++Yt+lA++a+SrhFrcLkd +++q+ Csa10g049960.1 294 LLSKHFMLKRRYGHYREQMRIAAASFEAAvaaVGVGAAEVYTALASRAMSRHFRCLKDGLVGQV 357 56666799*******************752227***************************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 4.7E-38 | 193 | 353 | IPR006563 | POX domain |
SMART | SM00574 | 3.9E-57 | 199 | 355 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 406 | 469 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.37E-10 | 409 | 470 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 409 | 473 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-17 | 410 | 477 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-28 | 412 | 476 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 426 | 465 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 637 aa Download sequence Send to blast |
MARDQFYGHN HHHHQEQQHQ MINQIQGFDE TNQNPTDHHH HYSHQIFGSN SNMGMMIDFS 60 KQQQIRMTSG PDHHHHHDQT SGGTDQNQLL EDSSSTMRLC NGNNDFPSEV NDERPPRRPS 120 QGLSLSLSSS NPTSISLQPF ELRTQQQQQG YSGKSAHHQN LQHSQMMMMM MNSHHQNNNN 180 NHQHHNHHHQ FQIGSSKYLS PAQELLSEFC SLGVKESDEE VMMMKHKKKQ KGKQQEEWDT 240 SHNNNDQHEQ SATTSSKKHV PPLHSLEFME LQKRKAKLLS LLEEVTYLQE IRILLSKHFM 300 LKRRYGHYRE QMRIAAASFE AAVAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQVQAT 360 SQALGEREED NRAVSIAARG ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV 420 TTLRAWLFEH FLHPYPSDVD KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR 480 GEQMESTTNP MMVDTKPDPN QIIRVEPESL SSIVTNPTSK TGLKALNSNQ PATTSYGSNF 540 DFSLYGNQAV TCAGEGGPRG DVSLTLGLQQ RNDGNGGVSL ALSPVTAQGG QLYYGSRDHT 600 DQEGPVQYSA SMLDDDQVQN LPYRNLMGAQ LLHDIV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 4e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g049960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB006707 | 0.0 | AB006707.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYC6. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436095.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | D7MIV5 | 0.0 | D7MIV5_ARALL; Uncharacterized protein | ||||
STRING | XP_010436095.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|