PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 637aa    MW: 72246.4 Da    PI: 7.1689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-094284651954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Csa10g049960.1 428 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 465
                     554459******************************88 PP

2BELL70.82.4e-232943571272
            BELL  12 LlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     Lls   ++++rY +y+eq+++ ++sFea+   +g+g+a++Yt+lA++a+SrhFrcLkd +++q+
  Csa10g049960.1 294 LLSKHFMLKRRYGHYREQMRIAAASFEAAvaaVGVGAAEVYTALASRAMSRHFRCLKDGLVGQV 357
                     56666799*******************752227***************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.7E-38193353IPR006563POX domain
SMARTSM005743.9E-57199355IPR006563POX domain
PROSITE profilePS5007112.017406469IPR001356Homeobox domain
CDDcd000862.37E-10409470No hitNo description
SMARTSM003895.6E-9409473IPR001356Homeobox domain
SuperFamilySSF466893.17E-17410477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-28412476IPR009057Homeodomain-like
PfamPF059208.5E-18426465IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MARDQFYGHN HHHHQEQQHQ MINQIQGFDE TNQNPTDHHH HYSHQIFGSN SNMGMMIDFS  60
KQQQIRMTSG PDHHHHHDQT SGGTDQNQLL EDSSSTMRLC NGNNDFPSEV NDERPPRRPS  120
QGLSLSLSSS NPTSISLQPF ELRTQQQQQG YSGKSAHHQN LQHSQMMMMM MNSHHQNNNN  180
NHQHHNHHHQ FQIGSSKYLS PAQELLSEFC SLGVKESDEE VMMMKHKKKQ KGKQQEEWDT  240
SHNNNDQHEQ SATTSSKKHV PPLHSLEFME LQKRKAKLLS LLEEVTYLQE IRILLSKHFM  300
LKRRYGHYRE QMRIAAASFE AAVAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQVQAT  360
SQALGEREED NRAVSIAARG ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV  420
TTLRAWLFEH FLHPYPSDVD KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR  480
GEQMESTTNP MMVDTKPDPN QIIRVEPESL SSIVTNPTSK TGLKALNSNQ PATTSYGSNF  540
DFSLYGNQAV TCAGEGGPRG DVSLTLGLQQ RNDGNGGVSL ALSPVTAQGG QLYYGSRDHT  600
DQEGPVQYSA SMLDDDQVQN LPYRNLMGAQ LLHDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15415473563Homeobox protein Meis2
3k2a_B3e-15415473563Homeobox protein Meis2
4xrm_A4e-15415473563Homeobox protein Meis2
4xrm_B4e-15415473563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067070.0AB006707.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYC6.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436095.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLD7MIV50.0D7MIV5_ARALL; Uncharacterized protein
STRINGXP_010436095.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]