PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g049670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 262aa MW: 30061.9 Da PI: 10.1802 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 66.1 | 7.8e-21 | 66 | 151 | 5 | 97 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + w+ + e+++L+ +t++s+++d++a+y+ +++s+++++sk+ql +Ki ++K +f++ +++++ gk sf+++hd+++f ls+ iWg Csa10g049670.1 66 MNWTITEELLILK-------ETKASYMSDWNAVYDRIRGSMESDFSKRQLQNKIEKMKLRFRDYQTRSSAGKRLSFTNAHDKQVFRLSMAIWG 151 5566666666664.......788999******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-17 | 66 | 151 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MKRGSDSSED SSSDYFVIRH NPQPLTKRKH EDDEEISGTE AMLRKRKQLK TRKTLLEASS 60 SGACKMNWTI TEELLILKET KASYMSDWNA VYDRIRGSME SDFSKRQLQN KIEKMKLRFR 120 DYQTRSSAGK RLSFTNAHDK QVFRLSMAIW GEIENNKTKS ASNENINMDQ RKVWVSNATD 180 DGEKDKSEDL NVLQEALEVA ASFRSLGNHQ QRSLLRNLKN LGATQRKELT HEWKALLAQD 240 MQLGIKKQSF YAKLVNAGFS A* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 46 | KRKHEDDEEISGTEAMLRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g049670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436055.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
Swissprot | Q9SJM4 | 2e-25 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | R0F6M4 | 1e-109 | R0F6M4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010436055.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14516 | 8 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36340.1 | 7e-26 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|