PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g047360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27568.1 Da PI: 10.1359 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.6 | 2.5e-21 | 6 | 54 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s v +s+R+++++ KAe LSvLC++ev+vi+++++g+l++++ Csa10g047360.1 6 SSSSSSYPLVALSNRLETLFRKAEQLSVLCQIEVCVIYYGPQGELKTWP 54 578888889***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 1.12E-15 | 15 | 81 | No hit | No description |
Pfam | PF00319 | 2.9E-12 | 15 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-13 | 15 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.316 | 15 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRSLPSSSSS SYPLVALSNR LETLFRKAEQ LSVLCQIEVC VIYYGPQGEL KTWPHEREKV 60 RNMAMRYSRL NESLRSKKRV NLSEFLKDKD KGLENPNKRR KTSSPKKNVD VLKYPISDHY 120 SPDQIPQLIQ SLQLNISTFQ RRLRFLESQE KHKLLDHHHQ SLASSSSLTT HSLNPSLHQS 180 LASSSSLTTQ SLNPSQQFSL FVYNHGDNTL SQIPVSASNL NNQDFSALLQ GSQLKNEHNM 240 Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g047360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436822.1 | 1e-175 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FIX0 | 1e-75 | AGL81_ARATH; Agamous-like MADS-box protein AGL81 | ||||
TrEMBL | D7MJC3 | 4e-87 | D7MJC3_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010436822.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40120.1 | 5e-66 | AGAMOUS-like 76 |
Publications ? help Back to Top | |||
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