PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g047280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 340aa    MW: 39265.2 Da    PI: 8.2436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g047280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ede l ++vk+ G++ W++Ia+ ++ gR +kqc++rw+++l
   Csa10g047280.1 122 KGQWTPTEDEMLMELVKRNGMKKWTAIAKILQ-GRIGKQCRERWHNHL 168
                      799*****************************.*************97 PP
2Myb_DNA-binding47.63.8e-15174216145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++ Ed++lv+++k+ G++ W+ Ia++++ gR+++ +k++w+
   Csa10g047280.1 174 KNSWSEKEDQILVEVHKLVGNK-WTEIAKRLP-GRSENIVKNHWN 216
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.783117172IPR017930Myb domain
SuperFamilySSF466892.66E-29121215IPR009057Homeodomain-like
SMARTSM007171.6E-14121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-26123174IPR009057Homeodomain-like
PfamPF139213.8E-17125183No hitNo description
CDDcd001672.44E-12125168No hitNo description
SMARTSM007174.8E-14173221IPR001005SANT/Myb domain
PROSITE profilePS5129419.583173223IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-20175221IPR009057Homeodomain-like
CDDcd001679.07E-10176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGNPSYSNTD AYGEFQNKIT SNLKLPLTYY TSFPVTSEGT SYNMHDFQGN TRLDDMISHN  60
QGLFIGSHEP AHVHFMVESQ QFNVSEPEDI NKSVTKETSN RRQEEQVIIK TDQKKKKGSN  120
IKGQWTPTED EMLMELVKRN GMKKWTAIAK ILQGRIGKQC RERWHNHLRP DIKKNSWSEK  180
EDQILVEVHK LVGNKWTEIA KRLPGRSENI VKNHWNATKR RLLSMRNRRS DALPLGNKAL  240
ENYIWSITIN NSVHMNRGAD TIIANAEMEN NKCEHVVDGV NLNLFARRQT AIMAMDASTT  300
AVYVPEKTTF TWGNDFERVY EPMDDTYMDA HEWLELANF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-431212216106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g047280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285962.21e-140transcription factor MYB115
SwissprotQ1PDP91e-139MY115_ARATH; Transcription factor MYB115
TrEMBLR0H2H41e-139R0H2H4_9BRAS; Uncharacterized protein
STRINGBostr.7200s0009.1.p1e-178(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.11e-141myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]