PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g046850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 139aa MW: 15544.5 Da PI: 9.0398 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 20 | 53 | 4 | 38 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ d++l+++v+ +G ++W++Ia++m+ +R+++ Csa10g046850.1 20 WTESQDLKLIELVEAYGLESWNLIAEKMQ-TRSGN 53 *****************************.***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.526 | 12 | 53 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.59E-8 | 14 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-4 | 16 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 19 | 53 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-9 | 20 | 64 | No hit | No description |
Pfam | PF00249 | 1.1E-9 | 20 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MHQERKKKKT KRPSRGERLW TESQDLKLIE LVEAYGLESW NLIAEKMQTR SGNGSYEGIE 60 IKNYSCNTPK EEATNLYARM PVQLSGHHHH FPTFPAGSSS AIFTPHVSIS KPSSSPEAAD 120 TMTRETPKFI DFLGVGHS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 12 | ERKKKKTKRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g046850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445657.1 | 7e-51 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | R0GYZ6 | 3e-31 | R0GYZ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445657.1 | 3e-50 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-08 | myb domain protein 110 |