PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g046780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 282aa MW: 30277 Da PI: 8.5386 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 75.2 | 9.6e-24 | 7 | 49 | 18 | 59 |
ZF-HD_dimer 18 GghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 Ggha+DGCgEfmps+++ +++++lkCaACgCHRnFHRr++++ Csa10g046780.1 7 GGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPDN 49 9*************9999899******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 18.86 | 1 | 46 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-8 | 7 | 45 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.9E-19 | 7 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-21 | 7 | 46 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.28E-19 | 131 | 204 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-29 | 132 | 204 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.3E-26 | 143 | 200 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSQEPRGGHA LDGCGEFMPS PSSISSDPTS LKCAACGCHR NFHRRDPDNN NNNNNDSSSP 60 IPLPPSAAVE YQPHHRHHPP PPLPPPPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAS 120 FSDLNFSGGH HHHHNQRNLH GSRKRFRTKF SQFQKEKMHE FAERLGWKMQ KRDDDDVREF 180 CRQIGVDKSV LKVWMHNNKN NFNRRDLAGT EIRKIDIGSG GNHAPILSGE INNNNNGHHG 240 GVGGGGGELH HSVSSGGGGG GFDSDSGGVH GGGNVNGSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 142 | 201 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g046780.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450775.1 | 6e-90 | PREDICTED: zinc-finger homeodomain protein 10-like | ||||
Swissprot | Q9FIW9 | 5e-83 | ZHD10_ARATH; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | R0H571 | 2e-86 | R0H571_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10058s0024.1.p | 9e-90 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39760.1 | 2e-47 | homeobox protein 23 |
Publications ? help Back to Top | |||
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