PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 282aa    MW: 30277 Da    PI: 8.5386
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer75.29.6e-247491859
     ZF-HD_dimer 18 GghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                    Ggha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++++
  Csa10g046780.1  7 GGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPDN 49
                    9*************9999899******************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152318.86146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-8745IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.9E-19747IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-21746IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.28E-19131204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-29132204IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-26143200IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSQEPRGGHA LDGCGEFMPS PSSISSDPTS LKCAACGCHR NFHRRDPDNN NNNNNDSSSP  60
IPLPPSAAVE YQPHHRHHPP PPLPPPPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAS  120
FSDLNFSGGH HHHHNQRNLH GSRKRFRTKF SQFQKEKMHE FAERLGWKMQ KRDDDDVREF  180
CRQIGVDKSV LKVWMHNNKN NFNRRDLAGT EIRKIDIGSG GNHAPILSGE INNNNNGHHG  240
GVGGGGGELH HSVSSGGGGG GFDSDSGGVH GGGNVNGSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211422011675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450775.16e-90PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9FIW95e-83ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBLR0H5712e-86R0H571_9BRAS; Uncharacterized protein
STRINGBostr.10058s0024.1.p9e-90(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.12e-47homeobox protein 23
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]