PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 268aa    MW: 30102.3 Da    PI: 9.5201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.39.7e-3027754128
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Csa10g046680.1   2 GEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 77 
                     579*************************************9856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.7811119IPR003441NAC domain
SuperFamilySSF1019411.96E-332119IPR003441NAC domain
PfamPF023651.7E-12677IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGEKEWYFYC PRDRKYRNST RPNRVTGGGF WKATGTDRPI YSLDSTRCIG LKKSLVFYRG  60
RAAKGVKTDW MMHEFRLPSV SDSPHSTYPS YNNKKQNLNN TSKEVPSSDA WAICRIFKKT  120
NAVSSQRSIP QSWVYPTIPD TNQYNSQSQS HNTTTLLASS DVLSHISTRK NRITSPVNEH  180
TSFTESAAAY FASQMLGVPY NTARTGDALF VRNSETGDTL FLSNNENNYF SNLTGALTHE  240
LPNVRSMVIE EETTVSEMSA TSYSTNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-32112468170NO APICAL MERISTEM PROTEIN
1ut4_B5e-32112468170NO APICAL MERISTEM PROTEIN
1ut7_A5e-32112468170NO APICAL MERISTEM PROTEIN
1ut7_B5e-32112468170NO APICAL MERISTEM PROTEIN
3swm_A5e-32112471173NAC domain-containing protein 19
3swm_B5e-32112471173NAC domain-containing protein 19
3swm_C5e-32112471173NAC domain-containing protein 19
3swm_D5e-32112471173NAC domain-containing protein 19
3swp_A5e-32112471173NAC domain-containing protein 19
3swp_B5e-32112471173NAC domain-containing protein 19
3swp_C5e-32112471173NAC domain-containing protein 19
3swp_D5e-32112471173NAC domain-containing protein 19
4dul_A5e-32112468170NAC domain-containing protein 19
4dul_B5e-32112468170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-141AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-141CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435843.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW51e-156NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLR0F9M71e-171R0F9M7_9BRAS; Uncharacterized protein
STRINGXP_010435843.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-159NAC domain containing protein 94