PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 173aa    MW: 19395.1 Da    PI: 7.8279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.72.9e-12289855127
             NAM  55 ek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++  wyfFs+++++    ++++ +t sg+W + g +k +++k+++ +glk+++ f+ +++ + ++ +W m+e+ 
  Csa10g046670.1  28 SNcVWYFFSRKSTAD---DETKWSTPSGIWVSGGDKKVITDKSSTSTGLKTSFNFFPKSDTNEVRPKWKMEEFC 98 
                     23489****988765...5677799****************9**************9999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.8781123IPR003441NAC domain
PfamPF023659.6E-82497IPR003441NAC domain
SuperFamilySSF1019414.58E-1526121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQLLMSISTT TIPRRFLAEE SSKSRLKSNC VWYFFSRKST ADDETKWSTP SGIWVSGGDK  60
KVITDKSSTS TGLKTSFNFF PKSDTNEVRP KWKMEEFCFT KFQTKRTLQV EHDAIVLCKV  120
SVSLAIKVEE IISEELVIGP LECECVMNRE ASVPPASSSS GSDDEARYRL IV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089239.12e-59PREDICTED: NAC domain-containing protein 37-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2388444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-07NAC domain containing protein 35