PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g046660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 24665.6 Da PI: 8.8954 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.6 | 6.6e-12 | 37 | 146 | 44 | 128 |
NAM 44 PwdLpk...................kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk......dkevlskkgelvglkktLvfy.kgr 112 P+dLpk k+k++++ w+fF+++ +ky++g r++r+t +g+W + k +ke +++++ l g+ k + fy ++ Csa10g046660.1 37 PEDLPKreiitisyfsynynlsghsKLKSTTNVWFFFTPA-RKYNRGPRTKRVTPHGRWGVKLKegggskKKEFKDQNSDLSGTMKPFNFYtRNI 130 5555533555555555555555554556666677777775.7799**************7443211122266777779999**********4445 PP NAM 113 apkgektdWvmheyrl 128 ++k + t+W m+eyrl Csa10g046660.1 131 DKKEKLTSWSMEEYRL 146 666678********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.224 | 7 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-16 | 21 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-9 | 28 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MASVSSPAPE SSTAATTPEI YQLAISLPPG FFFQPSPEDL PKREIITISY FSYNYNLSGH 60 SKLKSTTNVW FFFTPARKYN RGPRTKRVTP HGRWGVKLKE GGGSKKKEFK DQNSDLSGTM 120 KPFNFYTRNI DKKEKLTSWS MEEYRLDNFD TFSLCKLFQR KKEDEEPNPA IMVEQPTEIA 180 QNNVQQEGRD NTLHDTSSSS SDDDAATALL MIPQART* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g046660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445665.1 | 1e-120 | PREDICTED: NAC domain-containing protein 86-like | ||||
STRING | XP_010445665.1 | 1e-119 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-12 | NAC domain containing protein 28 |