PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g042380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 203aa    MW: 23092.2 Da    PI: 10.1903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g042380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-162673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++  +G g W+++a+  g++Rt+k+c++rw++yl
   Csa10g042380.1 26 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 73
                     79********************************************97 PP
2Myb_DNA-binding53.84.3e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ +++++++lG++ W++Ia++++ gRt++++k++w++
   Csa10g042380.1  79 RGNITAEEQLVIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8642173IPR017930Myb domain
SuperFamilySSF466893.74E-2924120IPR009057Homeodomain-like
SMARTSM007179.4E-122575IPR001005SANT/Myb domain
PfamPF002491.9E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-212780IPR009057Homeodomain-like
CDDcd001672.09E-82873No hitNo description
PROSITE profilePS5129424.25274128IPR017930Myb domain
SMARTSM007172.3E-1578126IPR001005SANT/Myb domain
PfamPF002492.2E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2481128IPR009057Homeodomain-like
CDDcd001679.59E-1283122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
METMKKKGRG KATITSQKEE EGTVRKGPWT MEEDFILFNY ILNHGEGLWN SVAKASGLKR  60
TGKSCRLRWL NYLRPDVRRG NITAEEQLVI IQLHAKLGNR WSKIAKHLPG RTDNEIKNFW  120
RTKIQRHMKV KVSSENMMNH HCSGNSQSSG MTTTEQGSSG KAIDMAESFS PATTTFNVVN  180
ENYWNVEDLW PVHLLNGDHH VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-272612627126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g042380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180910.0AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055740.0BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435630.11e-151PREDICTED: transcription factor MYB57
SwissprotQ9SSA11e-133MYB57_ARATH; Transcription factor MYB57
TrEMBLR0I8T71e-139R0I8T7_9BRAS; Uncharacterized protein
STRINGXP_010435630.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-135myb domain protein 57