PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g042300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23299.9 Da PI: 4.8442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 5 | 51 | 10 | 56 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 q++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Csa10g042300.1 5 FQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 51 5999******************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.1e-39 | 6 | 89 | 10 | 93 |
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k++++Lr+e+++ Csa10g042300.1 6 QVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVKDNDKLRSEVTS 89 9******************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.39 | 1 | 53 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-12 | 1 | 57 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 5 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 5 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.28E-16 | 6 | 54 | No hit | No description |
Pfam | PF00046 | 3.9E-16 | 6 | 51 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.6E-6 | 24 | 33 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 28 | 51 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-6 | 33 | 49 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.7E-17 | 53 | 94 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MMHVFQVHLL EKSFETENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW KTKQLERDYD 60 LLKSTYDQLL SNYDSIVKDN DKLRSEVTSL TEKLLGNEEE ANNELTPGRQ VPELNQLDPV 120 YLNPAAIKTE DRLSSGSVGS AVLDEDAPQL LDSCDSYFPS LVPIHSQQDN NACDNDRACF 180 SDVFVPTTSP SHHHGESLGF WAWP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 45 | 53 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g042300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010435620.1 | 1e-146 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-119 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | R0HRX8 | 1e-122 | R0HRX8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010435620.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8884 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-115 | homeobox 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|