PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g040760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 475aa MW: 53293.4 Da PI: 7.2434

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g040760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++v+a k++G W++I +++g ++t+ q++s+ qk+ Csa10g040760.1 39 REKWTESEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 83 789***************88.*****.**********98 PP
2	Myb_DNA-binding	44.5	3.5e-14	211	255	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++v+ k++G W++I +++g ++t+ q++s+ qk+ Csa10g040760.1 211 REKWTESEHQKFVESLKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 255 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-15	33	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.343	34	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.3E-16	37	86	IPR006447	Myb domain, plants
SMART	SM00717	6.5E-13	38	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-9	39	79	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-13	39	82	IPR001005	SANT/Myb domain
CDD	cd00167	2.41E-9	41	84	No hit	No description
SuperFamily	SSF46689	2.32E-14	205	259	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.697	206	260	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.7E-15	209	258	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	210	258	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-8	211	251	IPR009057	Homeodomain-like
Pfam	PF00249	7.9E-12	211	254	IPR001005	SANT/Myb domain
CDD	cd00167	2.65E-8	213	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MAMQERCESL CDGGSDELIS STDAFYLKTR KPYTITKQRE KWTESEHEKF VEALKLYGRA 60 WRRIEEHVGT KTAVQIRSHA QKFFSKVARD FGVSSETIEI PPPRPKRKPM HPYPRKLVIP 120 DAKEMAYGEL TGANKLVQDE DDRSPTSVLS AHGSDGLGSI GSNSPNSYSA DYQHSPERCE 180 SLCDGGSDEL ISSTDAFYLK TRKPYTITKQ REKWTESEHQ KFVESLKLYG RAWRRIEEHV 240 GTKTAVQIRS HAQKFFSKVA RDFGVSSETI EIPPPRPKRK PMHPYPRKLV IPDAKEMAYG 300 ELTGANKLVQ DEDDRSPTSV LSAHGSDGLG SIGSNSPNSS SADYQHSPGH ELSSHTEESL 360 SPESETKQSL KLFGKTFVVG DYNSSTSSDD SEDVKKKLDS ETHESVLCSS STSSSENMET 420 EMTLRVSPEF KRSERSAFSQ LKSSGTEMRG FMPYKKRVKV EENIDNGKMS YPLW*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MAMQERCESL CDGGSDELIS STDAFYLKTR KPYTITKQRE KWTESEHEKF VEALKLYGRA  60
WRRIEEHVGT KTAVQIRSHA QKFFSKVARD FGVSSETIEI PPPRPKRKPM HPYPRKLVIP  120
DAKEMAYGEL TGANKLVQDE DDRSPTSVLS AHGSDGLGSI GSNSPNSYSA DYQHSPERCE  180
SLCDGGSDEL ISSTDAFYLK TRKPYTITKQ REKWTESEHQ KFVESLKLYG RAWRRIEEHV  240
GTKTAVQIRS HAQKFFSKVA RDFGVSSETI EIPPPRPKRK PMHPYPRKLV IPDAKEMAYG  300
ELTGANKLVQ DEDDRSPTSV LSAHGSDGLG SIGSNSPNSS SADYQHSPGH ELSSHTEESL  360
SPESETKQSL KLFGKTFVVG DYNSSTSSDD SEDVKKKLDS ETHESVLCSS STSSSENMET  420
EMTLRVSPEF KRSERSAFSQ LKSSGTEMRG FMPYKKRVKV EENIDNGKMS YPLW*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g040760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519515	1e-175	AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds.
GenBank	BT010947	1e-175	BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440832.1	0.0	PREDICTED: protein REVEILLE 2
Swissprot	F4K5X6	1e-162	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	R0F5Q4	1e-167	R0F5Q4_9BRAS; Uncharacterized protein
STRING	XP_010440832.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14432	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-127	MYB_related family protein

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]