PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g039800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17150.7 Da PI: 10.4756 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l d+++ +G g W+ ++ g++R++k+c++rw +yl Csa10g039800.1 16 RGAWTDHEDKTLRDYITTHGEGKWSVLPKQAGLKRCGKSCRLRWKNYL 63 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.898 | 11 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-22 | 11 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-20 | 17 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-10 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-7 | 67 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MGKRATNALK REELNRGAWT DHEDKTLRDY ITTHGEGKWS VLPKQAGLKR CGKSCRLRWK 60 NYLRPGIKRG NISSDEEELI IRLHNLLGNR RKLQNVAATV KSVCICGGSP LPPPSPTSSL 120 TQGSSDLPPP TSSLTQGSSD PPLPTLSLTL ILQICR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-13 | 13 | 90 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g039800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371981 | 3e-91 | AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds. | |||
GenBank | AY519630 | 3e-91 | AY519630.1 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ447000 | 3e-91 | DQ447000.1 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ653318 | 3e-91 | DQ653318.1 Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436674.1 | 2e-59 | PREDICTED: transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 7e-56 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | D7MHT1 | 1e-53 | D7MHT1_ARALL; Uncharacterized protein | ||||
STRING | XP_010436674.1 | 6e-59 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-57 | MYB family protein |