PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g036090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 319aa    MW: 36482.8 Da    PI: 10.2289
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g036090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.61.6e-11553856
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ q+++Le+++ +++yp+ +e+e++ k+lg t + V+ WF+ rR + k
  Csa10g036090.1  5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGFTVKEVSGWFKRRRSRGK 53
                    788*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.2E-7159IPR001356Homeobox domain
PROSITE profilePS5007112.05155IPR001356Homeobox domain
SuperFamilySSF466893.04E-10356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-11354IPR009057Homeodomain-like
CDDcd000864.38E-8351No hitNo description
PfamPF000464.7E-9553IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGFTVKE VSGWFKRRRS RGKGMISPAD  60
DVVGAGNPQS YNTSRIRSSR CDFRAGVKKR SSVETRKANC QELFTSQHIL AKIFRKDGPP  120
LGSEFDHLSS GARKASWLGT SSVEQQKQIM TRKRKISELM DHTIQENATV MKHGIGKGLM  180
TVWRVMNPNR RDVSPCVGLL DERATLPQSS ACNPPHQKKK QRQLASILKQ KLLQKRSTEK  240
KRRCINREVE LNKDETQREF KENCELALDR EVFKETCQTT SILVDDEELE MRERQERGNP  300
LTCSCHHSSS GSHGCFLCK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g036090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496402e-90AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615342e-90AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026872e-90CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086298.10.0PREDICTED: homeobox-DDT domain protein RLT3-like
SwissprotF4JRF51e-180RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A178UY471e-179A0A178UY47_ARATH; Uncharacterized protein
STRINGXP_010497108.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.11e-169Homeodomain-like transcriptional regulator