PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g033360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 269aa    MW: 30965.9 Da    PI: 9.8129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g033360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
   Csa10g033360.1 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding53.36.5e-1773117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++
   Csa10g033360.1  73 RGQITPHEESIILDLHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5161571IPR017930Myb domain
SMARTSM007171.1E-161969IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-3019114IPR009057Homeodomain-like
PfamPF002492.2E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242174IPR009057Homeodomain-like
CDDcd001675.28E-122267No hitNo description
PROSITE profilePS5129419.70572122IPR017930Myb domain
SMARTSM007176.8E-1572120IPR001005SANT/Myb domain
PfamPF002499.7E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2475121IPR009057Homeodomain-like
CDDcd001672.87E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSWWGLKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ESIILDLHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KAKPATNNEE KTKSRLLKRQ QFKQQRELEL QQEQQLFQFD QLDMKKIIAL LEDNNSSSSS  180
DGGSNVFYAS KPFRYNNPNS LEEQYLQGRF APVNIPDANT MNEDNAIWDG FWNMDGVDGH  240
GGNLSAVAAT AACGPRKPYF HNLVIPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g033360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435255.10.0PREDICTED: transcription repressor MYB6
TrEMBLR0GP771e-165R0GP77_9BRAS; Uncharacterized protein
STRINGXP_010435255.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-133myb domain protein 79