PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g032270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29261.7 Da    PI: 4.8147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g032270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF291.4e-09651146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    k+++++ +++  f kR  g   KA ELSvLC+  v  i +++++ l
  Csa10g032270.1  6 KFSDDDLKKKNFFEKRFPGFKRKATELSVLCGNSVGFICYGPNNDL 51
                    688999999999*******************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-10658IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.512651IPR002100Transcription factor, MADS-box
PfamPF003191.1E-81051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAPRNKFSDD DLKKKNFFEK RFPGFKRKAT ELSVLCGNSV GFICYGPNND LQFNALSDHK  60
RKNHACDLYD FVSDIKGLSG EDLRRHIDKL SSHLVEIKQL KTSMLRRGDS KKPKPKETEE  120
DDDHIRVPEN ATITNCNVAM MPEDRLGFDD LGHVFPGYHE TDSSLGSYPA SKFSSDVGVS  180
DSSLFDPFSL GFSGGDYFPV YPMPATDYLG VCANDGVWDP CRMDLEFSSL FPGYDPLLGA  240
TDSFLSSTYQ TPVLEDNLGS VF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g032270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086283.10.0PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG16e-90D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010451530.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.17e-44AGAMOUS-like 49