PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g032110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31809.3 Da PI: 4.4466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.1e-09 | 133 | 180 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +i A++ +++L Csa10g032110.1 133 TKACRERLRREKLNERFMDLSSVLEPG---RTPKTDKPAIIDDAIRVLNQL 180 5678**********************8...8*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.214 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-6 | 133 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.32E-7 | 133 | 183 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-12 | 135 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-8 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-10 | 136 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQPNQED TFPDFVSYGV NLQQDSGEVF 60 SIGAQLDLSS FDGVLPQEPE QVGGKDCGTV QEEEVEIDSG SSAGAVKQEQ EHLDDDYSRK 120 RARTGSCSRG GGTKACRERL RREKLNERFM DLSSVLEPGR TPKTDKPAII DDAIRVLNQL 180 RDEAHKLEET NQKLLEEIKS LKAEKNELRE EKLVLKADKE KTEQQLKSMV VPSSGFMPQI 240 PAAFNHNKMA VYPSYGYMPM WHYMPQSVRD TSRDQELRPP AA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g032110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088053 | 0.0 | AY088053.1 Arabidopsis thaliana clone 40736 mRNA, complete sequence. | |||
GenBank | AY102106 | 0.0 | AY102106.1 Arabidopsis thaliana AT4g14410/dl3245w mRNA, complete cds. | |||
GenBank | AY133565 | 0.0 | AY133565.1 Arabidopsis thaliana At4g14410/dl3245w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010435125.1 | 0.0 | PREDICTED: transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 0.0 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | R0F5N0 | 0.0 | R0F5N0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010435125.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-177 | bHLH family protein |