PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g030960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 333aa    MW: 37120.9 Da    PI: 6.2411
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g030960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.7e-08345440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++ +++ ++C++++  lC +C ++ H+       Ht++
  Csa10g030960.1  3 AQCDYCGTEKALIYCKSDSAKLCLNCDVNVHSAnplsqrHTRS 45
                    68******99*********************667888888875 PP

2CCT59.61e-20278321144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa10g030960.1 278 RDEAKKRYKQKKSRRMFGKQIRYASRKARADTRKRVKGRFVKAG 321
                     99***************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-12147IPR000315B-box-type zinc finger
PROSITE profilePS501199.755147IPR000315B-box-type zinc finger
PfamPF006431.3E-6345IPR000315B-box-type zinc finger
CDDcd000211.03E-7547No hitNo description
PfamPF062034.1E-16278320IPR010402CCT domain
PROSITE profilePS5101714.366278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEAQCDYCGT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CFLQPTVIHC  60
MNEKVSLCQG CHWTASNCNG LGHKLQNLNP YSGCPSPSDF IKIWSSVIEP SATNWVSPFD  120
DSIKINELVD WDGLSTPMVT QTQNLKDHPS IFSMEYNLPN VIEEECSGLD LCEGINLDDA  180
PLNFNASNDI IGCSSPDQTK CYKYEGSYKE DNKTGLSPLF LPALYGGNVF TSMSLSMTNI  240
TGESSPTDYQ DCGISPGFLI GDSPWESNVE VTYNPKSRDE AKKRYKQKKS RRMFGKQIRY  300
ASRKARADTR KRVKGRFVKA GENFDYDASM VM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g030960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086525.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLR0GLP70.0R0GLP7_9BRAS; Uncharacterized protein
STRINGXP_010435043.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain