PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g029300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18964.3 Da    PI: 7.7371
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g029300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33e-112059443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skRr++++ KA  L+ L +a++av + s+ 
  Csa10g029300.1 20 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVTSPA 59
                    56889********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.755957IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-17968IPR002100Transcription factor, MADS-box
CDDcd002661.64E-231092No hitNo description
SuperFamilySSF554551.16E-151187IPR002100Transcription factor, MADS-box
PfamPF003191.3E-102262IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTMAMKRGGT KRKIEIKKRD TKQQRSVACS KRRQTLFSKA ADLCLLSGAN IAVFVTSPAE  60
NSDVVYSFSG YSPASEIADC YLNGKRPTSI NPQSKLGFWW EDTDLYRYCD NYTFSSLEKI  120
CGEPSSQATC YYDQNHTFAI KDLYRDSSSG YLLKQDDGFV ESLWETE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g029300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440162.13e-76PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0H9P92e-67R0H9P9_9BRAS; Uncharacterized protein
STRINGXP_010440162.11e-75(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.15e-56M-type_MADS family protein