PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g029280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 534aa    MW: 59319.6 Da    PI: 5.8823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g029280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12386432455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Csa10g029280.1 386 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 432
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-42115292IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-17382448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.234382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-14385436No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16386448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10386432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGQKFWENLE DRAMVESTIG SEACDFFIST ASASNTALTK LVSPPSDSNL QQGLRHVVEV  60
NVLGEMGQKF WENLEDRAMV ESTIGSEACD FFISTASASN TALTKLVSPP SDSNLQQGLR  120
HVVEGSDWDY ALFWLASNVN SSDGCVLIWG DGHCRVKKGV SSGEDYSQQD ETKRRVLRKL  180
HLSFVGSDED HRLAKSGALT DLDMFYLASL YFSFRCDSNK YGPAGTYVSG KPLWAADLPS  240
CLSYYRVRSF LARSAGFQTV LSVPVNCGVV ELGSLRNIPE DKSVIEMVKS VFGGSDFVQA  300
KEAPKIFGRQ LSLGGSKPRS MSINFSPKTE DDSGFSLESF EVQAIGGSNQ VYPYEQGKDE  360
TLYLTDEQKP RKRGRKPANG REEALNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL  420
LADAITYITD MQKKIRVYET EQQIMKRRES NQITPAEVDY QQRHDDAVVR LSCPLETHPV  480
SKVIQTLREN EVTPHDSNVA VTEEGVVHTF TLRPQGGCTA EQLKDRLLAS LAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25380442264Transcription factor MYC2
5gnj_B2e-25380442264Transcription factor MYC2
5gnj_E2e-25380442264Transcription factor MYC2
5gnj_F2e-25380442264Transcription factor MYC2
5gnj_G2e-25380442264Transcription factor MYC2
5gnj_I2e-25380442264Transcription factor MYC2
5gnj_M2e-25380442264Transcription factor MYC2
5gnj_N2e-25380442264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g029280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434826.10.0PREDICTED: transcription factor bHLH3
RefseqXP_010434827.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLR0GXH80.0R0GXH8_9BRAS; Uncharacterized protein
STRINGXP_010434826.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]