PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g028680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23859.6 Da PI: 10.016 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.2 | 7.2e-14 | 2 | 60 | 37 | 98 |
EEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 37 tledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++g sWev + +k+++ yv++ +GW++Fv++n L +f++F+++g++ f +v +f+ Csa10g028680.1 2 KIRAQWGSSWEVGV--SKNPRFYVMEkSGWEKFVSDNALGHSEFITFTHKGKMWF--TVNIFK 60 67889*********..******777659*********************999999..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.51E-7 | 1 | 60 | No hit | No description |
PROSITE profile | PS50863 | 11.843 | 1 | 62 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.85 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-11 | 1 | 61 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-12 | 2 | 63 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-11 | 3 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-9 | 113 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-11 | 113 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.741 | 117 | 207 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 120 | 207 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKIRAQWGSS WEVGVSKNPR FYVMEKSGWE KFVSDNALGH SEFITFTHKG KMWFTVNIFK 60 QDGKEMMQPP SLIKTDHVED DKKEEVVKKA EESKNFTRTE KVVRVRRDSG GASSSSVAEF 120 TVIIRKTYLK WLKIPKDHRQ KAKKAIFMIH HSNGKKTWDV VVCLAEGYAF FSGGWAYVVK 180 EYPIAVDDIC TFTFIKPDEL ILVVSKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g028680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885930.1 | 1e-91 | B3 domain-containing protein At2g16210 | ||||
Swissprot | Q5BPT7 | 1e-81 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L143 | 2e-90 | D7L143_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh2_kg.3__3493__AT2G16210.1 | 4e-91 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 2e-74 | B3 family protein |
Publications ? help Back to Top | |||
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