PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 575aa    MW: 63861.9 Da    PI: 8.4026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Csa10g027810.1  7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-11546No hitNo description
CDDcd002029.44E-17651No hitNo description
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.6E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.095740IPR000679Zinc finger, GATA-type
PfamPF139195.3E-10274368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RADGDESDDH  60
HRFQRMKSIS LSYKNKDTKM LKRKAIQVNN IIIKRPALEF NYGLKKAVIE EDASNRSSSG  120
SAVSNSESCA QFSSADGSEL TGPSQSNAWD TTVPCKRRTC VGRPKSSSVE KLTKDLYNIL  180
QEQQSSCLSV SSEEDLLFEN EMSMVSVEIG HGSVLMKNPH SFAREEESEA SSLSSIENKS  240
SISEAYSHSV KHVEIGAERG SYYGGKAIKQ EQFKRTKSQA ERVHVLGRHS SPLCSIDLKD  300
VFNFDEFIKQ FTEEEQKKLM KLLPQIDSNI LPDSLGMMFE SAQFKDNFSL FQQLIADGVF  360
DMSSSSGAKP EDIRTFKKLA LTDFNKSRLV ESYYLLKERE KETVNSVTTT SKSSNPNVPK  420
NIVTIKRRYE DQTQLKSESR GLMRSPKSVI KMKASHESKV LTENNVSCFN PRSLASVFAQ  480
EGGGSAVFGY EESRGLMRSP KRVIKMKVSH ESKVLTENNV SCFNPRSLAS VFAQEGGGSA  540
VFGYEGNCSS DQDLLLLDLP SNGSFPQAEL LHQI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625620.0AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086629.10.0PREDICTED: GATA transcription factor 26-like isoform X1
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGXP_010434645.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26