PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g027670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 324aa MW: 36839.8 Da PI: 9.3379 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 162 | 215 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+ Csa10g027670.1 162 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 215 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.2E-15 | 159 | 216 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 160 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-23 | 162 | 216 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 163 | 214 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MELFPSQPDL YLKISRRREE EKENQEQEVE RRLLGFRSKA SDSDRDSSGN LIHALQFTSS 60 KSEPIKTDNN QENNESLDQD LRSMLMMRPI RGIPLYKNQV RDHYYYSSTS PSPFFFSEVN 120 GQHASRRIIT NPNCSYNLHH RNRRQTQPQS PRFTAKRGVR APRMRWTATL HAHFVHAVQL 180 LGGHERATPK SVLELMDVQD LTLAHVKSHL QMYRTIKSTE KPTTSSGQSD TCENGTQVNS 240 EREATDLQGL WNNSSSEARF HLKAKASSGV DISSNENKWK NMDGRCSSNE RLSSDSSSLT 300 GTRRETETPN LDFTLATPNL SAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-16 | 163 | 217 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g027670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY048690 | 0.0 | AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434628.1 | 0.0 | PREDICTED: probable transcription factor KAN3 | ||||
Swissprot | Q941I2 | 0.0 | KAN3_ARATH; Probable transcription factor KAN3 | ||||
TrEMBL | R0F5I8 | 0.0 | R0F5I8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010434628.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13984 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 1e-162 | G2-like family protein |