PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g027420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 624aa MW: 67570 Da PI: 4.6023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 453 | 498 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Csa10g027420.1 453 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 498 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-55 | 67 | 270 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 449 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-18 | 452 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-14 | 452 | 502 | No hit | No description |
Pfam | PF00010 | 4.1E-10 | 453 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-18 | 453 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-16 | 455 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MSPTIVQLTD YHIDQSTDAT TNLWSTEDDA SVMEAFIGGS DHSSLFPPLP PPPLAPPALS 60 QVNEDTLQQR LQALIEGANE SWTYAVFWQL SYDFAGEDVE EGGVGGGGLT NNNTALLGWG 120 DGYYKGEEEK SRKKKTKPAS AAEQEHRKRV VRELNALISG GGGEVVNNGG SDEAGDEEVT 180 DTEWFFLVSM TQSFINGTGL PGQAFSSSNT IWLSGSNALA GSSCERARQG QIYGLQTMVC 240 VPCENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGGGC ESGSWAFNLN PDQGENDPRL 300 WISEPGVELG LVAPVIINTG NNSTSNSDSQ PISKLCNGGS SVENPKPQVT KSCEMVSVKN 360 GVENGFSSGQ SRFMGEDSSN KKRSPVSNNE EGMLSFTSVS VLPRPAKSGD SNHSDLEASV 420 VKEAESNRTV VEPEKKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY SLRAVVPNVS 480 KMDKASLLGD AISYINELKS KLLKAESDKE ELQKQIDGMS KEAANGKSSV KERNQEPGVS 540 VEMEVDVKII GWDAMIRVQC SKRNHPGAKF MEALKELDLE VNHASLSVVN DLMIQQATVK 600 MGNEFFTQDQ LKVALMEKVG ECS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 3e-88 | 19 | 266 | 2 | 227 | Transcription factor MYC3 |
4ywc_A | 3e-88 | 19 | 266 | 2 | 227 | Transcription factor MYC3 |
4ywc_B | 3e-88 | 19 | 266 | 2 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 434 | 442 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00086 | PBM | Transfer from AT4G17880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g027420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251689 | 0.0 | AF251689.1 Arabidopsis thaliana putative transcription factor BHLH4 (BHLH4) mRNA, complete cds. | |||
GenBank | AK221507 | 0.0 | AK221507.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04. | |||
GenBank | AL021889 | 0.0 | AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project). | |||
GenBank | AL161547 | 0.0 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434608.1 | 0.0 | PREDICTED: transcription factor MYC4-like isoform X1 | ||||
Refseq | XP_019086039.1 | 0.0 | PREDICTED: transcription factor MYC4-like isoform X2 | ||||
Swissprot | O49687 | 0.0 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | R0F4A8 | 0.0 | R0F4A8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010434608.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 0.0 | bHLH family protein |