PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g026800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 412aa MW: 45308.7 Da PI: 8.0613 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.8 | 3.8e-38 | 55 | 193 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaak 92 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ ++++++++++ + + + ++ + Csa10g026800.1 55 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNTNFPTDDDENQNQTLTTTVAaaatNSLS 148 689*************************************************************.333323333333333332222255665666 PP TCP 93 saa.kskksqksaasalnlak.esrakarararertrekmriknk 135 ++a +s++++++++s l+l++ e r kar+rarert+++ + +++ Csa10g026800.1 149 KSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERSS 193 6665788888888889999999***************99988866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-37 | 56 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.221 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 170 | 191 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MFRKLRDDDE MIGDLMKSNN NNNGDVVDNN NNNGNNRLSR WHHNSSRIIR VSRASGGKDR 60 HSKVLTSKGP RDRRVRLSVS TALQFYDLQD RLGYDQPSKA VEWLIKAAED SISELPSLNN 120 TNFPTDDDEN QNQTLTTTVA AAATNSLSKS ACSSNSDTSK NSSGLSLSRS ELRDKARERA 180 RERTAKETKE RSSDHHHHHH QSHNTTSFTD LLNSGSDPVN SNRQWMAQAP SASSPMEYFT 240 SGLILGSGQQ THFPISTNSH PFSSISDHHH HQHQHQHHPH QEFSFVPDHL ISPAGSNGGA 300 FNLDFNMSTP SGAGAAVSAS SGGGFSGFNR GTLQSNSTTS NHQHQSFLAN LQRFPTSSEG 360 GGGGPQFLFG ALPAENHHHN HNHNQNNNHQ FQLYYENGCR NSSDHKGKGK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g026800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367270 | 1e-156 | AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AF367292 | 1e-156 | AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AL021710 | 1e-156 | AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project). | |||
GenBank | AL161548 | 1e-156 | AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48. | |||
GenBank | AY102141 | 1e-156 | AY102141.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | CP002687 | 1e-156 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434543.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | D7MCT1 | 0.0 | D7MCT1_ARALL; Uncharacterized protein | ||||
STRING | XP_010434543.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-153 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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