PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g025470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 270aa    MW: 31550.7 Da    PI: 9.5386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g025470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-1959105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   Csa10g025470.1  59 KGQWTSEEDRILIQLVEKHGLRKWSHIAQVLP-GRIGKQCRERWHNHL 105
                      799*****************************.*************97 PP
2Myb_DNA-binding538e-17111153145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
   Csa10g025470.1 111 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 153
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.90254109IPR017930Myb domain
SuperFamilySSF466891.11E-3257152IPR009057Homeodomain-like
SMARTSM007171.5E-1758107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2760110IPR009057Homeodomain-like
CDDcd001677.71E-1562105No hitNo description
PfamPF139211.9E-2062119No hitNo description
PROSITE profilePS5129421.16110160IPR017930Myb domain
SMARTSM007174.8E-16110158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-22111159IPR009057Homeodomain-like
CDDcd001672.79E-11113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVEFYESKPQ LMNHHFQAAE NPTYFTRNHR PHHHQEINLL SSSSSSSSWK EKKPSTLVKG  60
QWTSEEDRIL IQLVEKHGLR KWSHIAQVLP GRIGKQCRER WHNHLRPDIK KETWSEEEDR  120
VLIEFHKEIG NKWAEIAKRL PGRTENSIKN HWNATKRRQF SKRKCRSKYP RPSLLQDYIK  180
SLNLGVLSAI SVPARGRRRE SNKKKDVVVA VEEKKKDQEE IYGQDRVVPE CVFTDDFGFN  240
EKLLEEGCSI DSLLDDIPQP DIDAFVHGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-45571602105C-Myb DNA-Binding Domain
1msf_C1e-45571602105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g025470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1980820.0DQ198082.1 Arabidopsis thaliana myb family transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436491.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L21e-141MYB98_ARATH; Transcription factor MYB98
TrEMBLR0F8H61e-155R0F8H6_9BRAS; Uncharacterized protein
STRINGXP_010436491.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-141myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]