PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g025290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 140aa MW: 15905.6 Da PI: 10.2921 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101.3 | 3.5e-32 | 78 | 128 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Csa10g025290.1 78 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 128 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-40 | 70 | 129 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.081 | 70 | 130 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.39E-40 | 71 | 131 | No hit | No description |
SuperFamily | SSF55455 | 4.71E-30 | 71 | 130 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 72 | 126 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-33 | 72 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-27 | 79 | 126 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-33 | 92 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-33 | 107 | 128 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MIPLYNVYTH LFTSTTLPSI FCNFSKSHTF QKIIFPRKIK LSSLFFSPPT AITAYQPELG 60 GDDSSPLRKS GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EVALIVFSSR 120 GRLYEYSNNR FLLILLLCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
3mu6_A | 3e-20 | 71 | 136 | 1 | 66 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-20 | 71 | 136 | 1 | 66 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-20 | 71 | 136 | 1 | 66 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-20 | 71 | 136 | 1 | 66 | Myocyte-specific enhancer factor 2A |
6c9l_A | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 71 | 136 | 2 | 67 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g025290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X53579 | 1e-166 | X53579.1 A.thaliana agamous (AG) gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436489.1 | 2e-90 | PREDICTED: floral homeotic protein AGAMOUS-like | ||||
Swissprot | P17839 | 2e-45 | AG_ARATH; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0D3A490 | 3e-62 | A0A0D3A490_BRAOL; Uncharacterized protein | ||||
STRING | XP_010436489.1 | 7e-90 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-48 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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