PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g025290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15905.6 Da    PI: 10.2921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g025290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.33.5e-3278128151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Csa10g025290.1  78 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 128
                     79***********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4070129IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.08170130IPR002100Transcription factor, MADS-box
CDDcd002653.39E-4071131No hitNo description
SuperFamilySSF554554.71E-3071130IPR002100Transcription factor, MADS-box
PROSITE patternPS00350072126IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-337292IPR002100Transcription factor, MADS-box
PfamPF003193.2E-2779126IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-3392107IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-33107128IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MIPLYNVYTH LFTSTTLPSI FCNFSKSHTF QKIIFPRKIK LSSLFFSPPT AITAYQPELG  60
GDDSSPLRKS GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EVALIVFSSR  120
GRLYEYSNNR FLLILLLCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2071136267Myocyte-specific enhancer factor 2B
1tqe_Q4e-2071136267Myocyte-specific enhancer factor 2B
1tqe_R4e-2071136267Myocyte-specific enhancer factor 2B
1tqe_S4e-2071136267Myocyte-specific enhancer factor 2B
3mu6_A3e-2071136166Myocyte-specific enhancer factor 2A
3mu6_B3e-2071136166Myocyte-specific enhancer factor 2A
3mu6_C3e-2071136166Myocyte-specific enhancer factor 2A
3mu6_D3e-2071136166Myocyte-specific enhancer factor 2A
6c9l_A4e-2071136267Myocyte-specific enhancer factor 2B
6c9l_B4e-2071136267Myocyte-specific enhancer factor 2B
6c9l_C4e-2071136267Myocyte-specific enhancer factor 2B
6c9l_D4e-2071136267Myocyte-specific enhancer factor 2B
6c9l_E4e-2071136267Myocyte-specific enhancer factor 2B
6c9l_F4e-2071136267Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g025290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX535791e-166X53579.1 A.thaliana agamous (AG) gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436489.12e-90PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotP178392e-45AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBLA0A0D3A4903e-62A0A0D3A490_BRAOL; Uncharacterized protein
STRINGXP_010436489.17e-90(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Huang Z, et al.
    APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
    New Phytol., 2017. 215(3): p. 1197-1209
    [PMID:27604611]
  2. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]