PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g019070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 675aa MW: 75967.8 Da PI: 6.362 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + Csa10g019070.1 146 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 236 88****************************9643..445569************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+ +r+ Csa10g019070.1 237 NGELRVGGRRA 247 9999***9987 PP | |||||||
2 | Auxin_resp | 111.9 | 6.2e-37 | 272 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++ k++F v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+ Csa10g019070.1 272 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 351 6799**************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-38 | 137 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 140 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-20 | 144 | 246 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 146 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 146 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-23 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-33 | 272 | 350 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-12 | 538 | 647 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-13 | 554 | 635 | No hit | No description |
PROSITE profile | PS51745 | 25.81 | 559 | 651 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MTNQGGEGLY DELWKLCAGP LVDVPQAGER VYYFPQGEGL YDELWKLCAG PLVDVPQAEE 60 RVYYFPQGHM EQLEASTQQD LNTGKPFFDL PPKILCNVMN VRLQAEKDTD EVYAQITLIP 120 VGTKVDEPMS PDPSPPELQK PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ 180 TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL 240 RVGGRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQAKT MFIVYYKPRT SQFIISLNKY 300 LEAMNNKFSV GMRFKMRFEG EDSPERRYSG TVIGVKDCSP HWKDSKWRCL EVHWDEPASI 360 PRPDKVSPWE IEPFATSESV PQSVMLMKKR PRHTSEVSAL GETQSKAVIL ANVGITASNL 420 WQSHEFAQSC LTSQRSSSQQ CYRDSTEDAK KSDWLNNSYS VSNLSKDSTL NDQMVSPVEQ 480 KNSETTASYR LFGIDLMSSS LAASEEKSAP MRPINITKPT LDSNSDPKSE ISKVSEEKKQ 540 EPAQTSPKEV QSKQSSSTRS RTKVQMQGVP VGRAVDLTAL NGYNELIDDL EKLFDIKGEL 600 QSRNQWEIVF TDDEGDMMLV GDDPWPEFCN MVKRIFIWSK EEVKKMTPGN QLRMMLTEVE 660 TTLKTISKSD NHSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-161 | 38 | 374 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-161 | 38 | 374 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-161 | 38 | 374 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g019070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF082176 | 0.0 | AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433831.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A178V403 | 0.0 | A0A178V403_ARATH; Auxin response factor | ||||
STRING | XP_010433832.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |