PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g018910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 408aa    MW: 44627.4 Da    PI: 9.2364
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g018910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.71.8e-22154198145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rC+RtDGKkWRCsr+v++++k+C rH h++r rsrk++e+
  Csa10g018910.1 154 DQEPWRCKRTDGKKWRCSRNVIPDQKYCKRHTHKSRPRSRKHVES 198
                     68****************************************997 PP

2QLQ53.85.8e-1985119236
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                     aF++aQ+q+L++Q  +yKy++a++PvP+eLl + +
  Csa10g018910.1  85 AFSNAQWQELERQRNIYKYMMASVPVPSELLSPFP 119
                     8******************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.7E-1184120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.95785120IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.5E-1285117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.466154198IPR014977WRC domain
PfamPF088791.3E-18156197IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVLPHHHYHP SYSSPSSSSL CYCSAGLGDP MFSVSSNQAY ASSHGDMFSL AGSSSASVTV  60
ADPFFTLSSS SGEIGRSMSG NASVAFSNAQ WQELERQRNI YKYMMASVPV PSELLSPFPK  120
NHPSTTNPDV TVAMAKGGSL QLGIASIASN NTADQEPWRC KRTDGKKWRC SRNVIPDQKY  180
CKRHTHKSRP RSRKHVESSH QSSNHSYTRS SAKNDTSQFT RTYPQFYGQP VNQVPVLSTL  240
QSASSLYDHN RGLRWFRKEG DAIGTLNPEI HETVPLKVGS RSELKRGFNY DLNFRQKEPI  300
VDQSFGALQS LLSVNQTPHN QETKRFVVQG KQVEAMGSSL TLSMAAGSME EAEGTNQHHQ  360
WVSHEGPSWI YSTTTPGGPL AEALYLGVST NNPSSSTTTS SCSRSSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g018910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1096191e-144AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBankAL1615611e-144AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBankATAC0023431e-144AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBankCP0026871e-144CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436409.20.0PREDICTED: growth-regulating factor 8-like
SwissprotQ9SU440.0GRF8_ARATH; Growth-regulating factor 8
TrEMBLR0H2280.0R0H228_9BRAS; Uncharacterized protein
STRINGXP_010436409.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.10.0growth-regulating factor 8
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]