PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g018910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 408aa MW: 44627.4 Da PI: 9.2364 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.7 | 1.8e-22 | 154 | 198 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++++k+C rH h++r rsrk++e+ Csa10g018910.1 154 DQEPWRCKRTDGKKWRCSRNVIPDQKYCKRHTHKSRPRSRKHVES 198 68****************************************997 PP | |||||||
2 | QLQ | 53.8 | 5.8e-19 | 85 | 119 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF++aQ+q+L++Q +yKy++a++PvP+eLl + + Csa10g018910.1 85 AFSNAQWQELERQRNIYKYMMASVPVPSELLSPFP 119 8******************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.7E-11 | 84 | 120 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.957 | 85 | 120 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.5E-12 | 85 | 117 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.466 | 154 | 198 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-18 | 156 | 197 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MVLPHHHYHP SYSSPSSSSL CYCSAGLGDP MFSVSSNQAY ASSHGDMFSL AGSSSASVTV 60 ADPFFTLSSS SGEIGRSMSG NASVAFSNAQ WQELERQRNI YKYMMASVPV PSELLSPFPK 120 NHPSTTNPDV TVAMAKGGSL QLGIASIASN NTADQEPWRC KRTDGKKWRC SRNVIPDQKY 180 CKRHTHKSRP RSRKHVESSH QSSNHSYTRS SAKNDTSQFT RTYPQFYGQP VNQVPVLSTL 240 QSASSLYDHN RGLRWFRKEG DAIGTLNPEI HETVPLKVGS RSELKRGFNY DLNFRQKEPI 300 VDQSFGALQS LLSVNQTPHN QETKRFVVQG KQVEAMGSSL TLSMAAGSME EAEGTNQHHQ 360 WVSHEGPSWI YSTTTPGGPL AEALYLGVST NNPSSSTTTS SCSRSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g018910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL109619 | 1e-144 | AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project). | |||
GenBank | AL161561 | 1e-144 | AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61. | |||
GenBank | ATAC002343 | 1e-144 | AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence. | |||
GenBank | CP002687 | 1e-144 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436409.2 | 0.0 | PREDICTED: growth-regulating factor 8-like | ||||
Swissprot | Q9SU44 | 0.0 | GRF8_ARATH; Growth-regulating factor 8 | ||||
TrEMBL | R0H228 | 0.0 | R0H228_9BRAS; Uncharacterized protein | ||||
STRING | XP_010436409.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7836 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 0.0 | growth-regulating factor 8 |
Publications ? help Back to Top | |||
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