PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g018550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 262aa MW: 28490.9 Da PI: 7.7795 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.3 | 1.4e-15 | 213 | 249 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ +g+ Csa10g018550.1 213 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 249 ******999************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.8E-14 | 76 | 111 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.624 | 76 | 111 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 78 | 110 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.4E-14 | 145 | 187 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 11.985 | 145 | 187 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 4.37E-12 | 206 | 256 | No hit | No description |
SMART | SM00401 | 1.2E-14 | 207 | 260 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.515 | 207 | 261 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-15 | 211 | 254 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.81E-16 | 212 | 260 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 213 | 240 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.2E-13 | 213 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MYGRHSQPVL IPNNDSAGGE DHVSASATSG HIPYDDMDEI PHPDSIYGGT GSDLIPDGSQ 60 LVAHRSEPSE LLVSRPPEGA NQLTISFRGQ VYVFDAVGPD KVDAVLSLLG GSTELASGPQ 120 VMELAHQQNH MPVVEYQSRC SLPQRAQSLD RFRKKRNARC FEKKVRYGVR QEVALRMARN 180 KGQFTSSKMT DGAYNSGTDQ DSAQDDGHPE ISCTHCGISS KCTPMMRRGP SGPRTLCNAC 240 GLFWANRGTL RDLSKKRISC L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g018550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB035310 | 0.0 | AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds. | |||
GenBank | AY086038 | 0.0 | AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439027.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_010439028.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_010439029.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 1e-174 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | R0H040 | 1e-177 | R0H040_9BRAS; Uncharacterized protein | ||||
STRING | XP_010439027.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-177 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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