PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g017350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 265aa    MW: 30567.1 Da    PI: 9.1749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g017350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  ++  +G  +W+t++ + g+ R +k+c++rw +yl
   Csa10g017350.1 12 KGLWSPEEDEKLRSCILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 59
                     678*******************************************97 PP

2Myb_DNA-binding42.21.8e-1369110548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++eE+e ++  +  lG++ W+ Ia+ ++ gRt++++k++w+++l
   Csa10g017350.1  69 SAEEEETILTFHYSLGNK-WSQIAKFLP-GRTDNEIKNYWHSHL 110
                      89****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.062763IPR017930Myb domain
SuperFamilySSF466899.73E-2711106IPR009057Homeodomain-like
SMARTSM007178.4E-101161IPR001005SANT/Myb domain
PfamPF002492.9E-121259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-201366IPR009057Homeodomain-like
CDDcd001673.08E-71559No hitNo description
PROSITE profilePS5129415.77764114IPR017930Myb domain
SMARTSM007171.0E-1164112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2267113IPR009057Homeodomain-like
CDDcd001671.37E-869110No hitNo description
PfamPF002497.1E-1269110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAKTKSGEKQ RKGLWSPEED EKLRSCILSH GHSCWTTVPI KAGLQRNGKS CRLRWINYLR  60
PGLKREMISA EEEETILTFH YSLGNKWSQI AKFLPGRTDN EIKNYWHSHL KKRWLKSRNL  120
QHPKFISSSS SPSSSLVSCG KRNPETLISN HVISFQRLLE NKSSSPSQES NGNNNHQCSS  180
APELPRLFFN EWLSSSDPHI DDSSVFIDSK HNRAPNIENN VSDYEETSDV YRFHYNEMMI  240
NNNWTLNDVV FGSKFQKHES PRES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g017350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196090.0AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433617.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-154LAF1_ARATH; Transcription factor LAF1
TrEMBLR0FAN01e-161R0FAN0_9BRAS; Uncharacterized protein
STRINGXP_010433617.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-154myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]