PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g016730.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HRT-like

Protein Properties

Length: 416aa MW: 46212.6 Da PI: 9.5432

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g016730.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.7	1.7e-17	212	241	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledG++C ++P+kgRKRC eHKG++ Csa10g016730.1 212 VCGVLLEDGTTCATTPIKGRKRCTEHKGKK 241 7***************************98 PP
2	HRT-like	46.9	4.8e-15	267	297	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d C+r+Pv RKRCe HKGmR+ Csa10g016730.1 267 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 297 8*****************************7 PP
3	HRT-like	32.7	1.3e-10	337	364	2	29
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 C +++++G +C+r + kg KRC++HK++ Csa10g016730.1 337 CEATTNNGLPCTRRASKGSKRCWQHKDK 364 9*************************86 PP
4	HRT-like	62.3	6.9e-20	383	413	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l GsvC++ PvkgRKRCeeHKGmRi Csa10g016730.1 383 ICGVKLYSGSVCEKAPVKGRKRCEEHKGMRI 413 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MFKRDDCIRT NHDAVFSKWQ GIARSMLLRK PISQTAELRK TYADYSLISR DLGPKILIGA 60 DDKENFRKGK DCVGRYRGVQ EALPGLSELG VSVINHDQGR KDDGLLATLG QTESINYRLR 120 SYGRSTAHPD VLKKLGDIPR KSGLSQTILP VTQKKADNKT EENKHDSAEE REFSSDAAEK 180 VSNLLLSPSR PQPVSDRHSH DGIVDGSDSA SVCGVLLEDG TTCATTPIKG RKRCTEHKGK 240 KLSRVSPVKL IPSEVPTRRE CQETDDICGV ILPDMVRCRR PPVLRRKRCE DHKGMRVNAF 300 FFLLNPTERD EAVKEAIKED KSKPKTCTGM NQEDLLCEAT TNNGLPCTRR ASKGSKRCWQ 360 HKDKTVDHGS SENVQSATIS KVICGVKLYS GSVCEKAPVK GRKRCEEHKG MRITS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MFKRDDCIRT NHDAVFSKWQ GIARSMLLRK PISQTAELRK TYADYSLISR DLGPKILIGA  60
DDKENFRKGK DCVGRYRGVQ EALPGLSELG VSVINHDQGR KDDGLLATLG QTESINYRLR  120
SYGRSTAHPD VLKKLGDIPR KSGLSQTILP VTQKKADNKT EENKHDSAEE REFSSDAAEK  180
VSNLLLSPSR PQPVSDRHSH DGIVDGSDSA SVCGVLLEDG TTCATTPIKG RKRCTEHKGK  240
KLSRVSPVKL IPSEVPTRRE CQETDDICGV ILPDMVRCRR PPVLRRKRCE DHKGMRVNAF  300
FFLLNPTERD EAVKEAIKED KSKPKTCTGM NQEDLLCEAT TNNGLPCTRR ASKGSKRCWQ  360
HKDKTVDHGS SENVQSATIS KVICGVKLYS GSVCEKAPVK GRKRCEEHKG MRITS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250\|UniProtKB:F4K933, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g016730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010433540.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 1-like
Swissprot	F4JU69	1e-162	ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBL	R0GZV0	0.0	R0GZV0_9BRAS; Uncharacterized protein
STRING	XP_010433540.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-154