PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g014840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 341aa    MW: 38523.7 Da    PI: 4.6199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g014840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-20120170155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  Csa10g014840.1 120 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAIVYDNAAIKLRG 170
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-34120179No hitNo description
SMARTSM003804.2E-39121184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30121178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22121178IPR016177DNA-binding domain
PfamPF008478.6E-13121170IPR001471AP2/ERF domain
PROSITE profilePS5103223.709121178IPR001471AP2/ERF domain
PRINTSPR003671.3E-10122133IPR001471AP2/ERF domain
PRINTSPR003671.3E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMDEFMDFRP VKYTEHKTVI RKYTKKSSVE KKKKMSDGAA RDSSSRLVRV CLIDRDATDS  60
SSDDEEFLFP RRRVKRLINE IRVEPSSSSS SSSGDVSASQ TKDRKRLPVD PPPPPVQTQK  120
KYRGVRQRPW GKWAAEIRDP EQRRRIWLGT FSTAEEAAIV YDNAAIKLRG PAALTNFAVP  180
PPEPEPEPEP ESNISVSTSE SMDDSQHLSS PTSVLNYQTY VSEEALNDHV KPVKQEFLEP  240
EQEPISWHLG QGNNHTNTDD SFPLDIPFLD NYFNESLPDI SIFDQPMSPI HQSSDNGFFN  300
DLVLFDSNYN TGENCSSDIK EIGSMFNDLD DSLISDLLLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21120177159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21120177462ATERF1
3gcc_A2e-21120177462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g014840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433287.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A178V2V50.0A0A178V2V5_ARATH; CRF4
STRINGXP_010433287.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-160cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]