PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g014570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 26907 Da PI: 4.6425 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.4 | 4.6e-20 | 14 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd++l+d+++ +G+g tW++Ia++++ gRt++++k++w+++ Csa10g014570.1 14 KGPWTAEEDQKLIDYIRFHGPGnwrilpknagTWSAIAARLP-GRTDNEIKNHWNTH 69 79****************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 5 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-16 | 8 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.489 | 9 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-17 | 14 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-15 | 16 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGNWRIL PKNAGTWSAI AARLPGRTDN 60 EIKNHWNTHI RKRLVRSGID PVTHSPRLDL LDLSSLLGVI FNQQNFTSVA THASSLLNPD 120 LLRLASLLLP LQNPNPTYAS NLGQNLQTPI TSSESSQPQT ESTTTPTNNN EISSFQPMNP 180 RLDDVGPADV LPPLSESTFD LDSLMSTPMS SPQQNSIEAE EANPSSFFDF GFPDDFILDD 240 FMF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g014570.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433260.1 | 1e-141 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9M0J5 | 1e-124 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | D7MDM8 | 1e-128 | D7MDM8_ARALL; AtMYB41 | ||||
STRING | XP_010433260.1 | 1e-140 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 7e-84 | myb domain protein 41 |
Publications ? help Back to Top | |||
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