PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g013610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CPP | ||||||||
Protein Properties | Length: 605aa MW: 64298.2 Da PI: 7.9662 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.7 | 1.3e-14 | 127 | 166 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + Csa10g013610.1 127 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVD 166 589**************************.********986 PP | |||||||
2 | TCR | 50.9 | 3e-16 | 212 | 251 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+C+C dCkN e Csa10g013610.1 212 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFE 251 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.0E-16 | 127 | 167 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.513 | 128 | 252 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.6E-11 | 129 | 164 | IPR005172 | CRC domain |
SMART | SM01114 | 1.8E-19 | 212 | 253 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-12 | 215 | 250 | IPR005172 | CRC domain |
PROSITE profile | PS50007 | 8.601 | 242 | 305 | IPR000909 | Phosphatidylinositol-specific phospholipase C, X domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MAEGGGGGEF PPKKDGVEEG FPAKNPARQL DFTGGSDEHS LSKAPAAPPT VVATPAVKPI 60 VTPTVPSTIR PGMTIAIGQV RPTLPVATTQ ILPSQALILN APIRHPNPES PIARPRPIVE 120 ARDGTPQKKK QCNCKHSRCL KLYCECFASG TYCDGCNCVN CFNNVDNEPA RREAVEATLD 180 RNPFAFRPKI ASSPHGARDK REDIGEVVLS GKHNKGCHCK KSGCLKKYCE CFQANILCSE 240 NCRCLDCKNF EGSEERQALF HGEHANHMTY LQQAANAAIT GAVGSSGFAP SPAPKRRKGQ 300 DILFNQATKD SSRLGQFPQV NSGRTTGPGT SPSPVSRAGG NASSVPSKFV YRSLLADIIQ 360 PQDVKALCSV LVAVAGEAAK TLTDQRKEKE NRVEDQTDTS LASSAQDHSQ ENKDAADVEM 420 VAADGNQADK SGPDDSFSDG ADASKAKPLS PATLALMCDE QDTIFMVSAA PPNGSVDPRG 480 CGTNSQSQSE IYAEQEKVVL TKFRDCLSRL ISYAELKESK CSSLARRHLQ PPATATVKTE 540 NGIQQQVPVV NGASRATSQP TVNKPQPMQL MNTTSSSAAA AAVATTNTHH HHNKPPALSE 600 NKDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-32 | 129 | 261 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-32 | 129 | 261 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g013610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118658 | 0.0 | AK118658.1 Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20. | |||
GenBank | BT005931 | 0.0 | BT005931.1 Arabidopsis thaliana At4g29000 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433149.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | R0H281 | 0.0 | R0H281_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433149.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |