PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g013480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 411aa MW: 44897.8 Da PI: 6.9002 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00055 | 270 | 305 | 15 | 55 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Csa10g013480.1 270 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 305 5556788888888887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.299 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-10 | 265 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-5 | 265 | 309 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-7 | 270 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR APPPLIGHQQ AATPLPPHMN PNNNYLRPRM 60 MPTLLPHFLP SPATSSSSSS STSLPNNPNI SSWLESNDLP PESWSLSQLL LGGLMMGEEE 120 RLEMMNHHNH HDEQQHHSFQ GKMRLENWEE QVLSHQQASM EAVDIKQESN INNNNGYVIS 180 SPNSPRNKSC VTTTTTSLNS NEDNNNNNNN NNMLDFSSNH NGLHLSEGKH IPPDRASECN 240 SVDIGGSTNK KPRLQPSPSS QSTLKVRKEK LGGRIAALHQ LVSPFGKTDT ASVLSEAIGY 300 IRFLQSQIEA LSHPYFGTTA SGNMRHQQHL QGDGSCIFPE DPGQLVNDQC MKRRGASSLS 360 TDNQNANEKP KKDLRSRGLC LVPISCTLQV GSDNGADYWA PAALGSAGFH * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g013480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488634 | 0.0 | AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY081316 | 0.0 | AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds. | |||
GenBank | BT000121 | 0.0 | BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433137.1 | 0.0 | PREDICTED: transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 0.0 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A178V0M1 | 0.0 | A0A178V0M1_ARATH; Uncharacterized protein | ||||
STRING | XP_010433137.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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