PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g013350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 496aa    MW: 54716.4 Da    PI: 7.1743
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g013350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.13e-35471951128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                     lp+G++F+Ptd+el+ e+L++kv +k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+       
  Csa10g013350.1  47 LPAGVKFDPTDQELI-EHLEAKVLAKDfkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdn 136
                     799************.99********95554442...143333666646**********.555666799******************87999999 PP

             NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Csa10g013350.1 137 nlqgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                     999987766788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3843214IPR003441NAC domain
PROSITE profilePS5100533.0147214IPR003441NAC domain
PfamPF023658.2E-1648195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
IEHLEAKVLA KDFKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNNLQG SSSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSSTSSLN AIGGGGGEAS  240
SGGEYHMRRD SGTTSGGSCS SSREIINVNP PNRSDEVGGI GGGVMAIAAA AVAAGLPSYA  300
MDQLSFVPFM KSFDEVARRE TPQSGQATCE GVMAEQHRHR HHRHQASAST SHHMANDHHH  360
HHQQHQQQRH HAFNISQPTH PISTIISPST SLHHASINIL DDNPYHVHRI LLPNENYQTQ  420
QQQRQEGEEE HNDGKMGGRS ASGLEELIMG CTSSTTHHDV KDGSSSLGNQ QEAEWLKYST  480
FWSAPDSSDN QDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g013350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546020.0AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433118.10.0PREDICTED: uncharacterized protein LOC104717275 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1P8B8V60.0A0A1P8B8V6_ARATH; NAC domain containing protein 75
STRINGAT4G29230.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]