PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g011520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 311aa MW: 32953.7 Da PI: 6.796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g011520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	138	183	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Csa10g011520.1 138 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 183 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.31E-13	131	187	No hit	No description
SuperFamily	SSF47459	6.28E-17	131	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.301	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	135	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-9	138	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-14	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MNSSSLLTPS SSSSPHFQSP ATFDHDDFLH HIFSSTPWPS SVLDEAPTPT PDCAAVPGFH 60 HHDVDSRNQI TMIPLSHNHN DALFNGFSTG SLPFQLPQGS GGQTQSPATA STTTGGTTAP 120 TQTKPKVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV PNGNKTDKAS MLDEIIDYVK 180 FLQLQVKVLS MSRLGGAASV SSQISEDAGG SHENTSSSGE NQTAKMTEHQ VAKLMEEDMG 240 SAMQYLQGKG LCLMPISLAT TISTATCPSR NPFVKDTGVP LSPNLSTTTI ANGSGSSLVT 300 VKDAPTVSKP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g011520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488601	0.0	AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432917.1	0.0	PREDICTED: transcription factor bHLH69-like
Swissprot	Q8S3D5	0.0	BH069_ARATH; Transcription factor bHLH69
TrEMBL	A0A1P8B7F0	0.0	A0A1P8B7F0_ARATH; LJRHL1-like 2
TrEMBL	A0A384LMW2	0.0	A0A384LMW2_ARATH; LRL2
TrEMBL	C0SVK8	0.0	C0SVK8_ARATH; Uncharacterized protein At4g30980 (Fragment)
STRING	XP_010432917.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-169	LJRHL1-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]