PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g010890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 458aa MW: 52293.6 Da PI: 9.9677 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.3e-20 | 22 | 103 | 9 | 98 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +ks+ + +p kf+++h + k+e+kt++l++ sW+ + ++k ++++lt+GWkeFv+a+gL++gDf+vFk++g++ f +v++f+ Csa10g010890.1 22 PGFKSH-IKIPVKFFSKHiK-GKHEGKTVKLRS---DSWQGTW--KGKMEGHTLTNGWKEFVEAHGLRVGDFLVFKHEGDMLF--HVTAFE 103 567777.99*********64.456889***988...6666666..66668899***********************9999988..888876 PP | |||||||
2 | B3 | 66.8 | 3.1e-21 | 148 | 242 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f++ +++++l+++ l +p++fa+++g++k ++ +++l++e+g+sWe +++ k++ ++++ +GWk+ + +n+ k+gD ++Fkl ++ ++lv+ + Csa10g010890.1 148 FSQSVTASNLSRDFLGVPRDFARRYGLDKGRH-EVVLMNEEGKSWESEVKSYKSG-QVFIFGGWKSLCTENKFKVGDPFTFKLLHN-AERLVFLL 239 6788999*********************9776.****************655555.555556********************9995.55579999 PP E-S CS B3 97 frk 99 +++ Csa10g010890.1 240 CSR 242 987 PP | |||||||
3 | B3 | 51.2 | 2.2e-16 | 250 | 347 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.yvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 f+k + ++++lk+g lp +f++e++++k++ +++l d++ +W +k + rk+s++ yv++ +GWk+F+ an++ +g++++++l++ ++++ Csa10g010890.1 250 FVKLTPTPNSLKLGKQHLPVSFMRENMLDKPG--KIILVDKDKVEWLMKRKGyRKGSRMmYVISgNGWKSFCAANEVGAGESLTLELIR-GGTSP 341 7888889999*****************99776..7**************96547777767555549*********************98.67777 PP EEEEE- CS B3 93 vvkvfr 98 ++k+++ Csa10g010890.1 342 LLKFVS 347 887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-25 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-24 | 10 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.689 | 13 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.23E-17 | 14 | 102 | No hit | No description |
SMART | SM01019 | 4.9E-22 | 16 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-15 | 25 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-21 | 141 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 142 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.11E-17 | 147 | 241 | No hit | No description |
PROSITE profile | PS50863 | 14.804 | 147 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-20 | 148 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-29 | 148 | 243 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-15 | 248 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.48E-13 | 249 | 345 | No hit | No description |
Pfam | PF02362 | 2.5E-15 | 250 | 347 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-26 | 250 | 349 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-16 | 250 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 250 | 349 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MENPSSSLFS PKNPHFFQPL LPGFKSHIKI PVKFFSKHIK GKHEGKTVKL RSDSWQGTWK 60 GKMEGHTLTN GWKEFVEAHG LRVGDFLVFK HEGDMLFHVT AFEPSCCEVQ YAQSLSHDEI 120 GESSRKEKEI EENVKTESDL FSSDLTCFSQ SVTASNLSRD FLGVPRDFAR RYGLDKGRHE 180 VVLMNEEGKS WESEVKSYKS GQVFIFGGWK SLCTENKFKV GDPFTFKLLH NAERLVFLLC 240 SRTEAGPNRF VKLTPTPNSL KLGKQHLPVS FMRENMLDKP GKIILVDKDK VEWLMKRKGY 300 RKGSRMMYVI SGNGWKSFCA ANEVGAGESL TLELIRGGTS PLLKFVSKME QSPSEAEARP 360 HKRARVQRWS QENRRLKHDV RQKITEEGEP SRRTRSSSKS TGDQENPQHT QSCSILDHLP 420 KVRQSIEETL TSIRRFRAKL ETKEQNLEAL LHEIGNY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g010890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432840.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like | ||||
Swissprot | Q8H2D1 | 0.0 | REM8_ARATH; B3 domain-containing protein REM8 | ||||
TrEMBL | A0A178UUS9 | 0.0 | A0A178UUS9_ARATH; Uncharacterized protein | ||||
STRING | XP_010432839.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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