PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 776aa    MW: 85375.5 Da    PI: 7.628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18284383198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Csa10g010470.1 284 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 376
                     99**************************555566778***************9989999999***9.********************654.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv++ ++
  Csa10g010470.1 377 LVMGYRK 383
                     7777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-30277388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-20281384IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-22282383No hitNo description
PROSITE profilePS5086311.053284385IPR003340B3 DNA binding domain
SMARTSM010194.9E-20284384IPR003340B3 DNA binding domain
PfamPF023621.3E-15284383IPR003340B3 DNA binding domain
PROSITE profilePS5105014.8513563IPR011124Zinc finger, CW-type
PfamPF074963.8E-13518560IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MESTKVCMNA LCGAVSTSGE WKKGWPMRSG DLASLCDKCG SAYEQSIFCQ VFHAEESGWR  60
ECTSCDKRLH CGCIASRFMM ELLDNGSVTC ISCAKKSALF SNVSQESNGR DLSSFASPEH  120
VGSVLERTNL KHLLHFQRIG STQSSLQMKQ EESLLPSRLD ALRHKTERKE LQELSAQPNL  180
SISLGPTLMS SPFHDAVVDD RSKATSIFQL APRSRQLLPK PANSAPTAAG MEPNGSLVSQ  240
IHVARPPPEG RGKTQLLPRY WPRITDQELQ QLSGHSNSKI IPLFEKVLSA SDAGRIGRLV  300
LPKACAEAYF PPISQPEGLP LKIQDIKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL  360
QAGDTVTFSR TEPEGKLVMG YRKATNSTAT QMFKGSNEPN LNMFSNNLNP GCGDINWSKL  420
EKTEDMGKDN LFLQSSLTSA RKRVRNIGTK SKRLLIDSVD VLELKVTWDE AQELLRPPQS  480
AKPSIVTLED QDFEEYDEPP VFGKKTVFVS RQTGEQEQWV QCDACGKWRR LPVDTLLPPK  540
WLCSDNLLDP ARSSCSAPDE LSPREHDTLV RQSKEFKRRR MASTNEKLNQ AQEASAAETL  600
ANAGITTTGE QGEIAVAATT KHPRHRAGCS CIVCSQPPSG KGKHKPTCTC TVCEAVKRRF  660
RTLMMRKRSR GEAGQASQQA QSESRDETEV ESIPAVEPAA GENIDLNSDP GASRVSMMSL  720
LQAAAFPLEA YLKQKAVSNT AGEQQSSDMV STEHGSSSAA QEQDKDTNGA QEPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-692623912131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g010470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280130.0AK228013.1 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL14-53-K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432786.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLR0F3W50.0R0F3W5_9BRAS; Uncharacterized protein
STRINGXP_010432783.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]