PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g009630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 960aa    MW: 106378 Da    PI: 5.7548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g009630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173581148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   Csa10g009630.1 35 KGQWTPEEDDVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81
                     799****************************9.************986 PP

2Myb_DNA-binding61.22.1e-1987133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd  ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l
   Csa10g009630.1  87 KGPWSKEEDNTIIALVEKHGPKKWSTISQHLP-GRIGKQCRERWHNHL 133
                      79******************************.*************97 PP

3Myb_DNA-binding543.7e-17139181145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+++l++a++ +G++ W+  ++ ++ gR+++++k++w+
   Csa10g009630.1 139 KNAWTQEEELILIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181
                      689*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0523081IPR017930Myb domain
SMARTSM007172.4E-143483IPR001005SANT/Myb domain
PfamPF002497.0E-153581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-223693IPR009057Homeodomain-like
SuperFamilySSF466892.66E-153691IPR009057Homeodomain-like
CDDcd001674.70E-133881No hitNo description
PROSITE profilePS5129432.64982137IPR017930Myb domain
SuperFamilySSF466894.12E-3184180IPR009057Homeodomain-like
SMARTSM007172.6E-1886135IPR001005SANT/Myb domain
PfamPF002494.1E-1887133IPR001005SANT/Myb domain
CDDcd001674.08E-1689133No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2794140IPR009057Homeodomain-like
SMARTSM007172.0E-15138186IPR001005SANT/Myb domain
PROSITE profilePS5129418.86138188IPR017930Myb domain
PfamPF002498.9E-15139182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-22141188IPR009057Homeodomain-like
CDDcd001679.05E-12141181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MKREMKAPIT PQESFQSELK GKHGRTSGPA RRSTKGQWTP EEDDVLCKAV ERFQGKNWKK  60
IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKHGPKKW STISQHLPGR  120
IGKQCRERWH NHLNPGINKN AWTQEEELIL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW  180
NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIAPSPSWM HSSGDEGNSR PGLDAEESEC  240
SQASTVFSQS TNDFQDEVKP GNEEFYMPEF HSGAEQKISN DAAEPYYPPF EDAKIVVPEI  300
SCEAECSNSH KVRTTTATED QLKGVSNDAK QDLDLDLLTH NMNNDGKNQA FQSSVRLSDQ  360
PSLPNSETDP EAQTLITDEE CCRVLFPDTM KDSCTSSGEQ GRNMIEPQKG KGSICSQSAE  420
TLVHETGKLP ALSWHPSSSE GLAVHNCVPL LDTGLERKPD TNDGFIDTDG HITSHGNDDN  480
DGIPEHQGLS YVPKDSLKLV PLNSFSSPSR VNKIYFPIDD KPAEKDKGAL CYEPPRFPSA  540
DIPFFSCDLV PSNSDLRQEY SPFGIRQLMI SSMNCTTPLR LWDSPCHDRS PDVMLNDAAK  600
SSSNAPSILQ KRHHHRDLLS PVLDRRKDKK HKRAATSSLA KDFSCLDVLL DEGDDCMSSR  660
PSESPENKNR CAFRSEAKDI RYAASGQSDQ EMIPRDEEPK ETLKSSGVTS MQNEKGCNEG  720
GASAKNDQET SGSLVEIRLF SPGMTGCRSD SKVNTSAKDL SNQHKCSLGD IPTDEISSEP  780
PCTVDSSPLS AFDKINSAGT SFDIENFSIF DGTPFRKLLD TPSPWKSPLL FGSFLQSPKL  840
PPEITFEDIG CFMSPGERSY DAIGLMKHLS EHSATAYADA LEVLGNDTPE TILKKRQLNK  900
SIQGKENHHL SHDQLGNRSQ VERRTLDFSD CGTPGKTMVS AASPGGYSSP SSYLLKSCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-66351886159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-66351886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g009630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516460.0AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
GenBankAF1760050.0AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds.
GenBankAF1897840.0AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432672.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_010432673.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLR0GUI60.0R0GUI6_9BRAS; Uncharacterized protein
STRINGXP_010432672.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]