PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g009630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 960aa MW: 106378 Da PI: 5.7548 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Csa10g009630.1 35 KGQWTPEEDDVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l Csa10g009630.1 87 KGPWSKEEDNTIIALVEKHGPKKWSTISQHLP-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54 | 3.7e-17 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+++l++a++ +G++ W+ ++ ++ gR+++++k++w+ Csa10g009630.1 139 KNAWTQEEELILIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.052 | 30 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.66E-15 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.70E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 32.649 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-18 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-18 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.08E-16 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 138 | 186 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.86 | 138 | 188 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.9E-15 | 139 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-22 | 141 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.05E-12 | 141 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 960 aa Download sequence Send to blast |
MKREMKAPIT PQESFQSELK GKHGRTSGPA RRSTKGQWTP EEDDVLCKAV ERFQGKNWKK 60 IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKHGPKKW STISQHLPGR 120 IGKQCRERWH NHLNPGINKN AWTQEEELIL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW 180 NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIAPSPSWM HSSGDEGNSR PGLDAEESEC 240 SQASTVFSQS TNDFQDEVKP GNEEFYMPEF HSGAEQKISN DAAEPYYPPF EDAKIVVPEI 300 SCEAECSNSH KVRTTTATED QLKGVSNDAK QDLDLDLLTH NMNNDGKNQA FQSSVRLSDQ 360 PSLPNSETDP EAQTLITDEE CCRVLFPDTM KDSCTSSGEQ GRNMIEPQKG KGSICSQSAE 420 TLVHETGKLP ALSWHPSSSE GLAVHNCVPL LDTGLERKPD TNDGFIDTDG HITSHGNDDN 480 DGIPEHQGLS YVPKDSLKLV PLNSFSSPSR VNKIYFPIDD KPAEKDKGAL CYEPPRFPSA 540 DIPFFSCDLV PSNSDLRQEY SPFGIRQLMI SSMNCTTPLR LWDSPCHDRS PDVMLNDAAK 600 SSSNAPSILQ KRHHHRDLLS PVLDRRKDKK HKRAATSSLA KDFSCLDVLL DEGDDCMSSR 660 PSESPENKNR CAFRSEAKDI RYAASGQSDQ EMIPRDEEPK ETLKSSGVTS MQNEKGCNEG 720 GASAKNDQET SGSLVEIRLF SPGMTGCRSD SKVNTSAKDL SNQHKCSLGD IPTDEISSEP 780 PCTVDSSPLS AFDKINSAGT SFDIENFSIF DGTPFRKLLD TPSPWKSPLL FGSFLQSPKL 840 PPEITFEDIG CFMSPGERSY DAIGLMKHLS EHSATAYADA LEVLGNDTPE TILKKRQLNK 900 SIQGKENHHL SHDQLGNRSQ VERRTLDFSD CGTPGKTMVS AASPGGYSSP SSYLLKSCR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g009630.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF151646 | 0.0 | AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds. | |||
GenBank | AF176005 | 0.0 | AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds. | |||
GenBank | AF189784 | 0.0 | AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432672.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_010432673.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | R0GUI6 | 0.0 | R0GUI6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010432672.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
---|---|---|---|
|