PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g009420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 307aa    MW: 34288.1 Da    PI: 4.8521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g009420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17200234135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Csa10g009420.1 200 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 234
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-1051290IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.66E-15193256No hitNo description
PROSITE profilePS5011412.044194230IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-17194244IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14197232IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-14199246No hitNo description
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15200234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERLASELFL VAGNPDSFVV DDLLDFSNDD GQTDDGFDTL LPDSSSVSTF TLADSSNSSS  60
SVFTDSTGFS HDLYIPSEDL AELEWLSNIV EETFSEEDQD KLHLLSGLKN PQTIGSTQTH  120
PIKPEPEPDF DQFIDTDESN VAVPAKARSK RSRSAASTWA SRLLSLADSD ESNPKKKQRR  180
VNEQEMAVEM DVDCGGGRRC LHCATEKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP  240
ASSPTFVMAR HSNSHRKVME LRRQKEMRDE HMLSQLRCEN LMMDIRSNGE DFLIHNHVAS  300
GFRHLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179PKKKQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g009420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432642.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826320.0GATA9_ARATH; GATA transcription factor 9
TrEMBLR0H0E90.0R0H0E9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432642.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-157GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]