PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g009320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 438aa    MW: 49641.7 Da    PI: 6.5659
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g009320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-083553931854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  Csa10g009320.1 355 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 393
                     5887779******************************88 PP
2BELL361.7e-122643003572
            BELL  35 ssFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     ++F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  Csa10g009320.1 264 AAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 300
                     69*********.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-19201298IPR006563POX domain
PfamPF075261.1E-4264296IPR006563POX domain
PROSITE profilePS5007110.981334397IPR001356Homeobox domain
SMARTSM003897.1E-5337401IPR001356Homeobox domain
CDDcd000865.77E-10337398No hitNo description
SuperFamilySSF466895.56E-15338406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-25340403IPR009057Homeodomain-like
PfamPF059201.4E-14354393IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDNDNAFSSL NNVMANQNPL LMDFIPSRED STSFSSMLPW NSIRSDPLQM GGFDIFNSML  60
TNKYLSSSSS RSFDVQENRN VESFEVMAPP PPPHPQLHHL DHLRPYDADA SNNMWGFEGN  120
SNSEFQTYSG VVGPSEPMMS TFGEDDFPFL ISNKRNSELS LSLATDVSDE CSEISLCAAT  180
RLASEQASCS SKDISNNVVT QSFSQLIFGS KYLHSVQEIL SHFATYSLDY SSRGAESGAA  240
NSAFTSRFEN LTEFLDDDSN NSEAAFHAAT ELDPQLHTRF ALQTISFLYK NLRERICKKI  300
LAMGSVLERG KDKSQENSIF HQHCLLQQLK RKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL  360
HPYPKDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE EMYAEMNKRK LDNSHLQPNG  420
ATLRMPKSVM MSQAMHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-14343401563Homeobox protein Meis2
3k2a_B7e-14343401563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g009320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0318040.0AL031804.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project).
GenBankAL1615820.0AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
GenBankX801270.0X80127.1 A.thaliana AtH1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086614.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox protein ATH1-like
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLD7M9B90.0D7M9B9_ARALL; Uncharacterized protein
STRINGXP_010437823.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]