PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g008930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 285aa    MW: 32403 Da    PI: 5.5189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g008930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-16341151398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++lv+p kf  +++ k   ++ +tl+++sg  ++v++  +   ++  ++ GW +Fvk++ Lk +D +vFk++g sef   v +f+
  Csa10g008930.1  34 HHCLVIPQKFSIHCKRK--LPQIVTLKSPSGAIYNVRVEQDDVEKTLAFRCGWDKFVKDHSLKGNDLLVFKFHGVSEF--EVLIFD 115
                     556*******9999766..7889***************88888888*************************9998999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2020115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.18222117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1923115IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-1824115No hitNo description
SMARTSM010195.7E-1725117IPR003340B3 DNA binding domain
PfamPF023625.8E-1434115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEENCEDCMQ WEEELYWTHF QTLHFSQLLL PGFHHCLVIP QKFSIHCKRK LPQIVTLKSP  60
SGAIYNVRVE QDDVEKTLAF RCGWDKFVKD HSLKGNDLLV FKFHGVSEFE VLIFDGQTLC  120
ERPASYFVRK CGHADKTKGT DFTATSSRSP EIHFNPVDLE TTPNQQRLIT PPVVDNELED  180
LIDIDVEIDT MLTPRLVVSQ TGYDQEEHFN SDIDTASAQL PVISPTSTGR VSKEKYPLSG  240
LKKMRGEISN DSLDHKLGMK IFLLIDYTLH QFLGIHLICP VPGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g008930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0356780.0AL035678.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project).
GenBankAL1615830.0AL161583.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432581.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X1
SwissprotQ8RYD15e-89REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A1P8B3A71e-154A0A1P8B3A7_ARATH; AP2/B3-like transcriptional factor family protein
STRINGXP_010432581.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]