PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g007520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 530aa    MW: 59694.2 Da    PI: 5.7476
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g007520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083343711954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Csa10g007520.1 334 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 371
                     664459******************************88 PP
2BELL127.93.7e-41200271172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  Csa10g007520.1 200 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 271
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-72135269IPR006563POX domain
PfamPF075261.4E-48141268IPR006563POX domain
PROSITE profilePS5007111.758312375IPR001356Homeobox domain
SMARTSM003891.0E-8315379IPR001356Homeobox domain
CDDcd000861.19E-10315376No hitNo description
SuperFamilySSF466891.54E-16316381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26318380IPR009057Homeodomain-like
PfamPF059201.0E-17332371IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MENYPETQFL PGNAMIHMNA TVSYSEELVS RERIEANNNV SASQERSRLG QLSQMQDVDQ  60
DFGSWRDQAS DRNGFQLMSA MAGATTAHLH TGQGLSLSLG SQIHPGIHQS MASRAEHFRG  120
NEYAIQSFPG GNQNLDVVRT ITNSKYLKAA QQLLDEAVNV RKALKQFQAE GDKNNEKPQE  180
PDQNTQDSCT NPPAEISQSE RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA  240
GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVIRKCLGE QQDGSDGKRV GIISRLKYVD  300
QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ  360
VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKR LAAADDDEDR DQEFSQDQTK  420
QDHGHDGYGE ETCGMVQGSQ MDGRRFMAVE PTYHVAEMSR LGRGDVSLTL GLQNSNGHDN  480
VTVMSSEAYS NFSGVDFYET AIPGTELEYV PGSRQNRTSS SQLVHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14321379563Homeobox protein Meis2
3k2a_B1e-14321379563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g007520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432392.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLR0F3V10.0R0F3V1_9BRAS; Uncharacterized protein
STRINGXP_010432392.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]