PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g007450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 278aa    MW: 31351 Da    PI: 6.9211
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g007450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18189222134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  Csa10g007450.1 189 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 222
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.6E-857277IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15183233IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15186246No hitNo description
PROSITE profilePS5011411.952187219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-14187220IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.76E-15188245No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003205.2E-16189223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MELWTEARAL KASLRGESTT SSLKHHQVIV SEDLSRTSSL PEDFSVECFL DFSEGQQLKE  60
EEDELVSASS SQEEQEQEQD CVFSSQPCLF DQLPSLPDED VEELEWVSRV VDDCSSPEVS  120
LLFKQTHKTK PNFSSRIPVK PRTKRSRNSL TGGRVWPLVS ANHQQHAVAT EKWRKKKQET  180
AAVVFQRRCS HCGTNNTPQW RTGPVGPKTL CNACGVRFKS GRLCPEYRPA DSPTFSNEIH  240
SNLHRKVLEL RKSKELGEET GEASTKKSDQ VKFGSKW*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g007450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171630.0AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07.
GenBankY136500.0Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432385.10.0PREDICTED: GATA transcription factor 3
SwissprotQ8L4M61e-162GATA3_ARATH; GATA transcription factor 3
TrEMBLD7MDJ61e-163D7MDJ6_ARALL; GATA transcription factor
STRINGXP_010432385.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-163GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]