PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g006860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 974aa MW: 108445 Da PI: 6.3316 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 649 | 699 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Csa10g006860.1 649 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 699 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.041 | 638 | 719 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-24 | 652 | 699 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.41E-24 | 866 | 958 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 7.3E-25 | 870 | 954 | No hit | No description |
PROSITE profile | PS51745 | 30.185 | 872 | 955 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.3E-28 | 872 | 955 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.01E-41 | 874 | 954 | No hit | No description |
Pfam | PF00564 | 7.4E-18 | 874 | 954 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD 60 STTMSDNNNN NSFLYGYQFA ENPSQDHVSN EETGRKFPPI APGFLKIEDL SNQPLNQLPF 120 DQSVAMSSAQ AEKFLLEETE GGRRWWIAPR TSQGPSSSVK DRLVQAIKGL MQDKDFLIQI 180 WVPIQQEGKN FLTTLEQPHF FNPKYLSLKR YRDVSVAYNF PAHEDSTESV GLPGRVFLGK 240 LPEWTPDVRF FRSDEYPRIK EAEKCDVRGS LALPVFERGS GTCLGVVEIV TTTQKMNYRP 300 ELDNICKALE SVNLRSSRNL KSPSREFLQV YNEFYYAALP EVSEFLTLVC RLYDLPLALT 360 WAPCARQGKV GSRHSDENFS ECVSTVDDAC IVPDHQSRNF LEACSEHHLL QGEGIVGKAF 420 KATKLFFVPE VITFSKTNYP LAHHAKISGL HAALAVPLKS KFNGSVEFVL EFFFPKTCLD 480 TEAQQDMLKS LSVTLQQDFR SLNLVIDKEL ELEVVFPVRE EVVFAETPLN NAQTGENMKP 540 LPLEEISQED SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGWDN NQIGSGHNNF 600 LSETEQFQKV SNSGRRIDMD PSFESASFGV GQTLLGSRRP GEKRRTKTEK TIGLEVLRQY 660 FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI 720 QLDSFYTSFP ELSSPHMSGT ATSFKNTDQS RNLTAQTENG VSAQGTAAAA PKSPPSSSCS 780 HSSGSSTCCS TGANQSSNTG NTSNTVTTLM AENASAILKR ARSEVRLHTM NQEETKSLSR 840 TLSHKTFSEH PLFENLPRLP ESNRRKLKAE GASKVKATFG EAKVRFTLLP TWGYRELQHE 900 IARRFNIDNI APFDLKYLDD DKEWVLLTCE ADLEECIDIY RSSQSRTIKI SVHEASQNKL 960 GGSFGSIGLG PSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g006860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL022604 | 0.0 | AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project). | |||
GenBank | AL161587 | 0.0 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432303.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_010432304.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | R0GGQ7 | 0.0 | R0GGQ7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010432303.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |