PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g006590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 269aa    MW: 29543.7 Da    PI: 5.5751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g006590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2099159257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + + +ps++++++++++l    ++ e++V++WFqNrRa+ k+
  Csa10g006590.1  99 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQIAEQNVYNWFQNRRARSKR 159
                     89*****************99**************************************97 PP
2Wus_type_Homeobox103.11.9e-3398161265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq
     Csa10g006590.1  98 TRQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ 161
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1694162IPR009057Homeodomain-like
SuperFamilySSF466893.17E-1794161IPR009057Homeodomain-like
PROSITE profilePS5007114.77195160IPR001356Homeobox domain
SMARTSM003893.7E-1497164IPR001356Homeobox domain
PfamPF000463.2E-1899159IPR001356Homeobox domain
CDDcd000865.27E-1299161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMEWDNQQQP NNHHSSNLQG IDVNGGGSGA GGGGMYVKVM TDEQYETLRK QIAIYGTICE  60
RLVEMHKTLT AQQDLAGGRL GGLYADPMMS SIGHKMTTRQ RWTPTPVQLQ ILERIFDQGT  120
GTPSKQKIKD ITEELSQHGQ IAEQNVYNWF QNRRARSKRK QHGGGGGGSS GNNNNESEVE  180
TEVEALNEKR RPESLLGLPD GNNNNNGLGT ATTAPRPEDL CFQSPEMSSD LHLLGVLSNP  240
RDEHLVGKMG LSESYNLYDH VEDYGMSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g006590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482680.0AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBankAY2514040.0AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBankBT0005380.0BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432267.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-163WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLD7MCZ41e-162D7MCZ4_ARALL; Homeobox-leucine zipper protein
TrEMBLR0GXF71e-161R0GXF7_9BRAS; Uncharacterized protein
STRINGXP_010432267.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-139WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]